Nocardioides aromaticivorans: CFH99_08820
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Entry
CFH99_08820 CDS
T07236
Name
(GenBank) DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
naro
Nocardioides aromaticivorans
Pathway
naro03420
Nucleotide excision repair
naro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
naro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFH99_08820
03430 Mismatch repair
CFH99_08820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
naro03400
]
CFH99_08820
Enzymes [BR:
naro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFH99_08820
DNA repair and recombination proteins [BR:
naro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFH99_08820
MMR (mismatch excision repair)
Other MMR factors
CFH99_08820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Viral_helicase1
ARMH5
Motif
Other DBs
NCBI-ProteinID:
QSR25724
LinkDB
All DBs
Position
1782215..1785418
Genome browser
AA seq
1067 aa
AA seq
DB search
MNPAISTPEDLQRVMRAEFPPSPEQWTAITAPLSPVVVIAGAGSGKTTLMAARVVYLVLT
GQVRPEEILGLTFTTKAAAELRQRVRAALTAAGVLDLKQAADGEEVLEPTVATYNAYAAG
LLTDHGLRIGHEPDTRVITDAARYQLGARAVDRYDGAVEKLSDHPPTVIQNLLALDGAMS
EHLVGPDDVLAFDAAERKAFERAVAEEQAGKNRKTYVEASQKAVDVIDRRAELMGLVASY
RRLKAELGLMDFSDQIALAARLADAQPEVGRLERERFKVVLLDEYQDTSVAQATLLARLF
GEGHAVMAVGDPNQAIYGWRGASVSNIINFPEVFPAAGGAPVPVLPLTVNRRSDTRILDV
ANKLAEPLMAKYGDKVAVLRHGSTRPGSVRVKVFETHLDELAWLAGEVQATHDAGTPWAK
IAVLSRDNQHGEAVFDALTGADIPVEIVGLSGLVRLPEIATVVATLKLVQDVTDNESLLS
LLAGPRWAIGPRDLRLLGLRAFELAGRGGRDETAGSVHDQLVAIADGIDPAEVPCLDDAL
ADPGTAAYSPEALERFALLRDELRLLRSSVGEPLLDLVRRIVDVTGVDVELASSMSKAAA
ARRENLDLFVKAVADFQAVDGDVTLPALIAWLTAEDEAGNGLEVATPSGADSVKLLTVHR
SKGLEWSTVFCVGVGEGRFPSTQGRSLWCSSPSVLPAPLRGDADDLPQLAGHDKAALDAY
RAATRAHEAEEELRLGYVAFTRPEHDLWVTSFLWGTRKNPYGPSSFQVAIRELCDGWGEP
VDWLDKPEKGAVNPFDAVDPSRPWPVEGIGAETARRLDAAQRVRSADPAAGDDDLELDLV
DAARVADWDQEIERLLAEARSDRSQRVEVPLPSSLSATALGRLRDDPEGFARDLARPMPR
PPAPAARFGTRFHAWVEARFGQQGLFEPDELEGRADAGIDDDSDLKELINRFEAGPFATR
EPTAIEAPFALVLTGAGGVRQVVRGRIDAVYTEPDGSYLVVDWKTGVHQEADPLQLALYR
LAWSELTDVPLERVRAAFCYVRTGDVVEHDGLPDRAGIEDLLSGGPR
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgaacccggcgatcagcacccccgaggacctccagcgggtgatgagggcggagttcccg
cccagccccgagcagtggacggcgatcacggcgccgctgtcgccggtggtcgtgatcgcg
ggcgccggctccggcaagaccaccctgatggcggcccgcgtcgtctacctcgtgctgacc
ggtcaggtgcggcccgaggagatcctcggcctgaccttcaccacgaaggcagcggccgag
ctgcgccagcgggtccgggccgcgctgaccgcggcgggcgtgctcgacctcaagcaggcg
gccgacggtgaggaggtccttgagccgaccgtggccacctacaacgcctacgccgccggc
ctgctcaccgaccacggccttcggatcggccacgagcccgacacccgggtcatcaccgac
gccgcgcgctaccagctcggcgcccgcgccgtcgaccgctacgacggcgccgtcgagaag
ctgtccgaccatccgccgaccgtgatccagaacctcctcgcgctcgacggggcgatgagc
gagcacctggtcgggcccgacgacgtgctcgcgttcgacgccgccgagcggaaggcgttc
gagcgggccgtcgccgaggagcaggcgggcaagaaccgcaagacctacgtcgaggcgagc
cagaaggcggtcgacgtgatcgaccgccgggcggagctgatgggcctcgtcgcgtcgtac
aggcggttgaaggcggagctcgggctcatggacttcagcgaccagatcgcgctggcagcg
cggctcgccgacgcgcagccggaggtcggccggctcgagcgcgagcggttcaaggtcgtg
ctcctcgacgagtaccaggacacgtccgtggcccaggccaccctcctcgcgcgcctgttc
ggtgagggccacgccgtgatggccgtcggtgaccccaaccaggcgatctacggctggcgt
ggtgcgtcggtgtccaacatcatcaacttccccgaggtcttcccggcggccggcggggcc
cccgtcccggtgctgccgctcacggtcaaccgccgctccgacacccgcatcctcgacgtc
gccaacaagctcgccgagccgctgatggcgaagtacggcgacaaggtcgccgtcctccgt
cacggatcgacgcggccgggatcggtgcgggtcaaggtgttcgagacccacctcgacgag
ctcgcgtggctggccggcgaggtgcaggccacccacgacgccgggacgccctgggcgaag
atcgcggtgctgagccgggacaaccagcacggcgaggccgtgttcgacgcgctcaccggc
gccgacatcccggtcgagatcgtgggtctctccggtctggtccggctgcccgagatcgcg
accgtcgtggccacgctcaagctggtccaggacgtcaccgacaacgagtcgctgctgagc
ctgctggccggcccccgctgggcgatcggcccgcgcgacctgcgtctgctgggcctgcgg
gccttcgagctcgccggtcgcggcggtcgtgacgagacggccgggtcggtccacgaccag
ctggtcgccatcgcagacggcatcgacccggcggaggtcccgtgcctcgacgacgcgctc
gccgacccgggaacggcggcgtactccccggaggcgctggagcgcttcgccctcctccgc
gacgagctgcgcctgctgcggtcgtcggtgggggagccgctcctcgacctggtccgtcgc
atcgtcgacgtcaccggggtcgacgtcgagctggcgtcgtcgatgagcaaggcggccgcc
gcccgccgcgagaacctcgacctgttcgtgaaggcggtcgcggacttccaggcggtcgac
ggcgacgtcaccctgccggcgctgatcgcgtggctcacggccgaggacgaggccggcaac
ggactcgaggtcgcgacgccctcgggtgcggactcggtcaagctcctcaccgtccaccgg
tcgaagggcctcgagtggtccaccgtgttctgcgtgggtgtcggtgagggccggttcccg
agcacgcaggggcggtcgctgtggtgctcctcgccgagcgtgctgcccgcgccgctgcgc
ggcgacgccgacgacctgccgcagctcgcgggccacgacaaggcagcgctcgacgcctac
cgcgcggccacccgggcgcacgaggccgaggaggagctgcgcctgggctatgtcgcgttc
acgcgccccgagcacgacctgtgggtcacgtccttcctgtggggcacgcgcaagaacccc
tacgggccctcgtccttccaggtcgcgatccgcgagctctgcgacggctggggcgagccg
gtcgactggctcgacaagcccgagaaaggcgccgtcaacccgttcgacgcggtcgacccc
tcgcggccgtggccggtcgagggcatcggggccgagaccgcccggaggctcgacgccgct
cagcgggtacgaagcgcggacccggccgccggggacgacgacctcgagctcgacctcgtc
gacgcggcccgggtcgcggactgggaccaggagatcgagcggctgctcgcggaggcccgg
tccgaccggtcccagcgcgtcgaggtgccgctgccctcgtcgctgtcggcgacggcgctg
ggtcgcctgcgcgacgacccggagggcttcgcccgcgacctggcccggccgatgccgcgg
ccgccggcgccggccgcccggtttggcacccggttccacgcgtgggtggaggcgcggttc
ggccagcaggggctcttcgagcccgacgagctggaggggcgcgccgacgcgggcatcgac
gacgacagcgacctgaaggagctgatcaaccgcttcgaggcgggccccttcgcgacccgc
gagcccacggcgatcgaggcgccgttcgcgctggtcctgaccggggccggcggagtgcgg
caggtggtccgcggccggatcgacgcggtctacaccgagcccgacggctcctacctcgtg
gtcgactggaagaccggcgtccaccaggaggccgacccgctccagctcgcgctctaccgg
ctcgcgtggtcggagctcaccgacgtcccgctcgagcgggtgcgggcggcgttctgctac
gtgcggaccggcgacgtcgtggagcacgacggcctgcccgaccgggcgggcatcgaggac
ctgctcagcggcggaccacgctga
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