Nocardioides aromaticivorans: CFH99_09935
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Entry
CFH99_09935 CDS
T07236
Name
(GenBank) helicase SNF2
Organism
naro
Nocardioides aromaticivorans
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
DUF7917
SWIM
Motif
Other DBs
NCBI-ProteinID:
QSR25942
UniProt:
A0ABX7PJK3
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Position
complement(2032484..2035678)
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AA seq
1064 aa
AA seq
DB search
MNVLAQLTDTFLERHFDPGTLARAREVVERGAVRRPEVGMLSAASVTATAEVLGSRVEPY
QVQLHVEAPTADYAGWLFTVCTCPVRSVCKHGAALALTLRQSFAPAASIPSIGSTWRRTL
ERVVTELDRQHREPVDEVPLALEISLQEPRRGYQGVGRTLHVRPLRRGRNKPWVKTGADW
SDVAAAEVTGGFPRAQADAVAALHQLWMGHRSYYYAGVAPSLDEFGGQVVRALRTARDAG
VTLLGGRGTAGVSVADDEAEVVVLLSDSASGGTSVHAAVTLGDQSWRGDDVIPIGNPATS
VGLLDADGHLLIAALDSPMPLSVRHLVDGPGLTVPPADADDLRAELPVLMRHLTVRTETA
AIELPEPLRPTLVLTVTWHTATKAGLAWTWEYGDDGSRSCALGSRDPLGGVRDRAAEREI
VGQVAPELLGTTTATDGEALALAIHELPHLRTLPDVRVVEEERPDFREVDVAPEIRFDVV
EPDDDKPVTDWFDLAVSVRVADESIPLPDVLAALTLGLEFLVLPSGMYVTTDRPEFDRLR
EVVAAAAELHDHDGERIAVGRQDLGLWAQLAETGLVDSQVAEWVRRAEALRDLTDIPRPE
PQGLATRLRSYQREGFWWLAFLWQHGLGGILADDMGLGKTLQVLALIAHARSERPDEGPF
LVVAPTSVVTAWADEAARHAPGLRVRVASRRTDHVAELAADADVVVTTYTLLRLAQEEYA
AVTWAGLVLDEAQQVKNHQSKTYTAVRTLEAPFRLAVTGTPFENRLMELWSLLSITVPGL
YPWPRRFAEKVVRPIERDADKAVLDRFRARVKPFLLRRTKELVADDLPPKQEQVLPVELA
PRHRKIYDTHLAKERQRILGLVEDFDRNRVAIFSALTTLRQLALDPALVDEEHERVGSAK
LDVLVDHLLEITAEGHRALVFSQFTSFLRRVRSRLEDAGIATTYLDGATRDRSAVIEEFR
SGSAPVFLISLKAGGVGLTLTEADYVFVLDPWWNPAAEAQAVDRAHRIGQTKHVHVYRLV
ASDTIEEKVMELKARKAELFAQVIDGDGAMSTSIGADDIRGLFE
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgtcctcgcccagctcaccgacaccttcttggagcgtcacttcgaccccgggacg
ctggcgcgtgcccgtgaggtcgtcgagcggggcgccgtgcgccggcccgaggtcgggatg
ctgtcggccgcgtcggtcaccgcgacggccgaggtgctgggctcgcgggtcgagccctac
caggtgcagctgcacgtcgaggcgcccacggccgactacgcgggctggctcttcaccgtc
tgcacgtgccccgtgcgctcggtgtgcaagcacggcgccgccctcgcgctgaccctgcgc
cagagcttcgcgccggccgcgagcatcccctcgatcggctcgacctggcgacggacgctg
gaacgggtggtgaccgagctcgaccggcagcaccgggagccggtcgacgaggtcccgctg
gccctcgagatcagcctccaggagccgcgccgcggctaccagggcgtcggacggacgctg
cacgtgcgccccctgcggcgtggccgcaacaagccctgggtcaagaccggcgcggactgg
tccgacgtggcggcggcagaggtcaccggcggcttcccccgcgcgcaggccgacgccgtc
gcagcgctccaccagctctggatgggccaccgctcctactactacgccggcgtggcgccc
tcgctcgacgagttcggcggccaggtcgtgcgcgcgctgcgcacggcccgcgacgccggc
gtcaccctgctcggcggcagggggaccgcgggcgtcagcgtcgccgacgacgaggcggag
gtcgtcgtcctgctgtccgacagtgcgtcgggtggcacgtccgtgcacgcggcggtgacc
ctcggcgaccagtcgtggcgcggtgacgacgtcatcccgatcggcaacccggccacgtcg
gtcggcctgctcgacgccgacggccacctgctgatcgccgccctcgactcccccatgccg
ctgtcggtccgccacctcgtcgacggccccgggctcacggtcccgcccgccgacgccgac
gacctgcgcgccgagctgccggtcctgatgcgccacctgacggtgcgcacggagacggcg
gccatcgagctgcccgagccgctgcgcccgacgctggtgctcacggtcacctggcacacc
gcgaccaaggccgggctggcctggacctgggagtacggcgacgacggcagccgcagctgc
gcgctcggcagccgcgacccgctcggcggggtccgggaccgggcggccgagcgcgagatc
gtcggtcaggtcgctcccgagctgctcggcaccaccacggccaccgacggcgaggccctc
gcgctggccatccacgagctcccccacctgcgcaccctccccgacgtgcgggtcgtggag
gaggagcgccccgacttccgcgaggtcgacgtcgcgcccgagatccgcttcgacgtcgtg
gagcccgacgacgacaagccggtcaccgactggttcgacctcgccgtgagcgtgcgggtc
gccgacgagtcgatcccgctgccggacgtgctcgcggcgctcacgctcggcctggagttc
ctcgtgctgccgagcggcatgtacgtcaccaccgaccgccccgagttcgaccggctccgc
gaggtcgtcgccgcggccgccgagctgcacgaccacgacggagagcggatcgccgtcggc
cgccaggacctcggcctgtgggcgcagctcgccgagaccggcctcgtcgacagccaggtc
gccgagtgggtccggcgggccgaggccctccgcgacctgaccgacatcccccgcccggag
ccccagggtctcgccacccggctgcgcagctaccagcgcgagggcttctggtggctggcc
ttcctctggcagcacggcctcggcgggatcctcgccgacgacatgggcctgggcaagacg
ctccaggtgctcgcgctgatcgcgcatgcccggtccgagcggcccgacgagggtcccttc
ctcgtcgtcgcgccgaccagcgtcgtgaccgcctgggccgacgaggccgcccggcacgcg
cccggcctccgggtgcgggtcgcgagccgtcgtaccgaccacgtcgcggagctcgccgcc
gatgccgacgtcgtcgtgacgacctacaccctgctccgcctcgcccaggaggagtacgcc
gccgtcacgtgggcgggcctggtcctcgacgaggcccagcaggtcaagaaccaccagagc
aagacctacaccgccgtgcgcaccctcgaggcgcccttccggctggccgtcaccggcacc
cccttcgagaaccggctgatggagctctggtcgctgctctccatcacggtgcccggcctc
tacccgtggccgcgccggttcgccgagaaggtcgtgcgccccatcgagcgcgacgccgac
aaggccgtcctcgaccggttccgggcgcgggtcaagccgttcctgctgcgccggaccaag
gagctcgtcgccgacgacctgccgccgaagcaggagcaggtgctgcccgtcgagctcgcg
ccccggcaccgcaagatctacgacacccacctcgcgaaggagcgccagcgcatcctcggc
ctcgtcgaggacttcgaccgcaaccgggtcgcgatcttcagtgccctgaccaccctgcgc
cagctcgcgctcgacccggcactggtcgacgaggagcacgagcgggtcgggtcggccaag
ctcgacgtcctcgtcgaccacctgctcgagatcaccgcggagggtcaccgcgcgctcgtc
ttcagccagttcacctccttcctgcgccgggtccggtcacggctggaggacgccgggatc
gccacgacctacctcgacggcgcgacccgcgaccggagcgcggtcatcgaggagttccgg
tcgggctccgccccggtcttcctcatctcgctcaaggcgggcggtgtcggcctgaccctg
accgaggccgactacgtcttcgtgctcgacccgtggtggaaccccgccgccgaggcgcag
gccgtcgaccgcgcccaccggatcggccagaccaagcacgtccacgtctaccggctggtc
gcgagcgacaccatcgaggagaaggtcatggagctcaaggcccgcaaggccgagctcttc
gcccaggtgatcgacggcgacggcgcgatgagcacctcgatcggtgccgacgacatccgc
gggctgttcgagtga
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