Nocardioides aromaticivorans: CFH99_14490
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Entry
CFH99_14490 CDS
T07236
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
naro
Nocardioides aromaticivorans
Pathway
naro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
naro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFH99_14490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
naro03019
]
CFH99_14490
Messenger RNA biogenesis [BR:
naro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFH99_14490
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
QSR26835
LinkDB
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Position
complement(2988977..2990662)
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AA seq
561 aa
AA seq
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MSHPHPELSAPPKLPKNGLRVIPLGGLGEVGRNMTVFEYDGRLLIVDCGVLFPDDHHPGV
DLILPDFEAIRDRLDAVEALVLTHGHEDHIGATPYLLRERQDIPLVGSELTLALVNSKLR
EHRLRQTPFYTVKEGDRISFGPFELEFVAVNHSIPDALAVAIRTGAGLVLHTGDFKMDQL
PLDGRITDLRAFARLGEEGVDLFLTDSTNADVPGFTTAERKITPVLEQAFSESKQRIIVA
CFASHVHRVQQVLDAAVKYDRKVAYVGRSMVRNMAIARDLGYLKVPPGVMVEAKELANLA
PERQVLISTGSQGEPLSALARIAQRTHNFVHLEEGDTVVLASSLIPGNENAVYRVINGLA
RLGARVVHKGNALVHVSGHASAGELLYCYNIVKPRNVLPVHGEVRHMLANGDLAKQTGVE
NVVYAEDGVVVDLVDGVASVVGKVACGYVFVDGQSVGDVTESELKDRRILGEEGFVSVIV
VVDSVSGKVSAGPEIHARGHAWADSDFEGIKQPIVDAVNRALDEGSTDTYQLQQVVRRTI
GRWVSNTHKRRPMIIPVVVEA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcacccgcaccccgagctctccgccccgccgaagctgccgaagaacggcctgcgg
gtcatcccgctcggcggtctcggcgaggtcggccgcaacatgaccgtcttcgagtacgac
ggccggctgctcatcgtcgactgcggcgtcctgttccccgacgaccaccacccgggcgtc
gacctgatcctcccggacttcgaggccatccgggaccgcctcgacgccgtggaggcgctg
gtcctgacccacggccacgaggaccacatcggcgcgacgccgtacctcctgcgcgagcgc
caggacatcccgctcgtcggctccgagctgaccctcgcgctggtgaactccaagctccgc
gagcaccggctgcgccagacgccgttctacacggtcaaggagggcgaccggatctcgttc
ggtcccttcgagctcgagttcgtcgcggtcaaccactccatccccgacgcgctcgccgtg
gcgatccgcaccggcgccggcctcgtgctgcacaccggtgacttcaagatggaccagctg
ccgctggacggccggatcacggacctccgcgccttcgcgcgactgggggaggagggcgtc
gacctcttcctcaccgactccaccaacgccgacgtcccgggcttcacgaccgcggagcgc
aagatcaccccggtgctcgagcaggcgttctccgagtcgaagcagcggatcatcgtcgcc
tgcttcgcctcgcacgtgcaccgcgtccagcaggtgctcgacgccgcggtgaagtacgac
cgcaaggtcgcctacgtcggtcgctcgatggtgcgcaacatggccatcgcgcgcgacctc
ggctacctcaaggtcccgccgggcgtgatggtggaggccaaggagctcgccaacctcgcc
cccgagcgccaggtgctgatctccaccggctcgcagggcgagcccctgagcgcactggcc
cggatcgcgcagcgcacgcacaacttcgtgcacctggaggagggcgacaccgtcgtcctc
gcctccagcctgatccccggcaacgagaacgccgtctaccgcgtcatcaacggcctggcc
cgcctcggcgcccgcgtcgtccacaagggcaacgccctggtgcacgtcagcggccacgcg
agcgccggcgagctgctctactgctacaacatcgtcaagccgcgcaacgtgctgcccgtc
cacggcgaggtccggcacatgctcgccaacggcgacctggccaagcagaccggcgtcgag
aacgtcgtgtacgccgaggacggcgtcgtggtcgacctcgtcgacggcgtcgcctccgtg
gtcggcaaggtcgcctgcggctacgtcttcgtcgacggccagtccgtcggcgacgtcacc
gagtccgagctcaaggaccgccggatcctcggcgaggagggcttcgtctccgtgatcgtg
gtcgtcgactcggtctccggcaaggtctccgccggccccgagatccacgcccgcggccac
gcatgggcggactcggacttcgagggcatcaagcagccgatcgtcgacgccgtcaaccgc
gcgctggacgagggcagcaccgacacctaccagctccagcaggtggtgcgccgcacgatc
ggccgttgggtgagcaacacccacaagcggcggccgatgatcatcccggtggtcgtggag
gcctga
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