Nocardioides aromaticivorans: CFH99_17980
Help
Entry
CFH99_17980 CDS
T07236
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
naro
Nocardioides aromaticivorans
Pathway
naro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
naro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFH99_17980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
naro03019
]
CFH99_17980
03009 Ribosome biogenesis [BR:
naro03009
]
CFH99_17980
Enzymes [BR:
naro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CFH99_17980
Messenger RNA biogenesis [BR:
naro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFH99_17980
Ribosome biogenesis [BR:
naro03009
]
Prokaryotic type
rRNA processing factors
CFH99_17980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Motif
Other DBs
NCBI-ProteinID:
QSR27514
LinkDB
All DBs
Position
complement(3741806..3745036)
Genome browser
AA seq
1076 aa
AA seq
DB search
MTDAPTETPIEATTAETPAEAPAPAPAEPPAEAPADPPAEAVEKPAKPAKKAAAKKAPAK
KAAAKKTTAKKAAAKPAADEGAEATADGDDAKPAKKAPAKKAAAKKAPAKKAAASRSAAA
KTASKAKAKPAPESEQLVLTPDEDEPTDTAATDTAATDTAADGTTSAAVLFQAPKVTTRK
RSAAKPKPKPEVEEPVEDAEATEEDAEETAETPVEAPAEATEEQPAEAAEGDDSADEDDE
ESDDAEGADGTTGPARRRRRRGGRRRRKPAGAGQGAGEGDDADDAEGETDQAEGAEGETT
EAEATESGDSGDDAEASENGGGGQGSSSSRRRRRRRRAGEGGGDDGGDDPENTVTRVRKP
RSADDEITSISGSTRLEAKKQRRREGREAGRRRAPIVSEAEFLARRESVERVMAIRQRKD
LTQIAVLEDKVLVEHYVARESQTSLIGNVYLGRVQNVLPSMEAAFIDIGKGRNAVLYAGE
VNWASLGHKEGQPRKIESVLQSGQTVLVQVTKDPIGHKGARLTSQVSLAGRFLVYVPDGT
TSGISRKLPDTERARLKNLLKEIVPDTAGVIVRTAAEGASEDELTRDVERLKARWEDIES
KVAKGNAPQLLYGEPDLTLKVVRDLFTEDFAKLVVQGDDAWATVKEYVDHVAPDLVERLE
QHQTGDDAPDLFATYRIDEQIAKGLDRKVWLPSGGSLIIDRTEAMTVVDVNTGKFTGSGG
NLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLGRDRTR
HQVAEVTSLGLVQMTRKRIGTGLLEAFSENCSHCQGRGIVVHDLPVEPKRGGGNQGGGES
SEESRRPSRRRKGRGQGGENGAAEAAPKPVPSPKDVAAMAKHHDEVPADDEVPADEAAPV
DEAATVVEEAPVEETPVEETPVEETPAEVPAAVEEVVAPEPVAEEPVTEEPAAEEPVSEE
PVAEEPVAAAEEQVVEVAAPLEEPEAVVPEPEAAAEPEPEPVATTTVVTRTRTRRSAATR
PAGPPAATEAAPDAAPEAAHEAAPEAPEAADQAADQPAEEPHVEHVPIKKKGARKR
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgacggacgcgcccaccgagaccccgatcgaggccaccacggccgagacccccgccgag
gcgcctgccccggcgcccgccgagccgcctgctgaggcgccggcggacccgcccgcggag
gcggtcgagaagcccgcgaagccggccaagaaggccgccgcgaagaaggcgccggccaag
aaggccgccgccaagaagaccacggcgaagaaggccgccgccaagccggccgccgacgag
ggcgccgaggccacggccgacggcgacgacgccaagccggccaagaaggcgcccgccaag
aaggcggccgcgaagaaggcgccggcgaagaaggccgccgcctcgaggtcggccgccgcg
aagacggcgagcaaggcgaaggcgaagcccgccccggagtcggagcagctggtgctgacg
cccgacgaggacgagccgaccgacaccgccgccactgacaccgccgccactgacaccgcc
gccgacgggaccacctcggccgccgtgctcttccaggcgccgaaggtgaccacccgcaag
cggtcggccgcgaagccgaagccgaagcccgaggtggaggagccggtcgaggacgccgag
gccaccgaggaggacgcggaggagaccgccgagaccccggtcgaggcgcccgcggaggcc
accgaggagcagccggcggaggccgccgagggcgacgactccgccgacgaggacgacgag
gagtcggacgacgccgagggcgccgacggcaccaccggcccggcccgtcgccgacgtcgc
cgtggcggccgtcgccgccgcaagccggccggtgccggccagggtgccggtgagggcgac
gacgccgacgacgccgagggcgagacggaccaggccgaaggcgccgagggcgagaccacc
gaggccgaggccaccgagtcgggcgactccggcgacgacgccgaggcgtcggagaacggc
gggggaggccagggcagcagctcgtcgcgccgccggcgccgccgccgccgtgccggtgag
ggtggcggggacgacggcggggacgaccccgagaacaccgtcacccgcgtgcgcaagccg
cgctcggccgacgacgagatcacgtcgatctccggctccacccggctcgaggccaagaag
cagcgccgccgcgagggccgtgaggccggacgccgccgggcgccgatcgtgagcgaggcc
gagttcctcgcccgccgggagtcggtcgagcgcgtgatggcgatccgccagcgcaaggac
ctcacccagatcgccgtcctcgaggacaaggtcctcgtcgagcactacgtcgcccgcgag
tcgcagacctcgctgatcggcaacgtctacctcggccgggtccagaacgtgctgccctcg
atggaggccgccttcatcgacatcggcaagggccgcaacgccgtcctgtacgccggcgag
gtcaactgggcctcgctcggccacaaggagggccagccgcgcaagatcgagtcggtcctg
cagtccggccagaccgtcctggtgcaggtgaccaaggacccgatcggccacaagggcgcc
cggctcaccagccaggtcagcctcgccggccggttcctcgtctacgtgcccgacgggacg
acgtccggcatctcccgcaagctgcccgacaccgagcgcgcgcggctcaagaacctcctc
aaggagatcgtccccgacaccgccggcgtcatcgtccgcacggccgccgagggcgcctcc
gaggacgagctgacccgcgacgtcgagcggctcaaggcccggtgggaggacatcgagtcc
aaggtcgccaagggcaacgccccgcagctgctctacggtgagccggacctgaccctcaag
gtcgtccgtgacctgttcaccgaggacttcgccaagctcgtcgtccagggcgacgacgcc
tgggcgacggtcaaggagtacgtcgaccacgtcgctcccgacctcgtcgagcgccttgag
cagcaccagaccggcgacgacgcgcccgacctgttcgcgacgtaccggatcgacgagcag
atcgccaagggcctcgaccgcaaggtctggctgccctccggcggctcgctgatcatcgac
cgtaccgaggcgatgacggtcgtcgacgtcaacaccggcaagttcaccggctccgggggc
aacctcgaggagacggtcacgaagaacaacctcgaggccgccgaggagatcgtccgccag
ctccggctgcgcgacatcggcgggatcatcgtcgtcgacttcatcgacatggtgctcgag
tcgaaccgcgacctcgtcctgcgccgcctcgtcgagtgcctgggccgcgaccgcacccgc
caccaggtcgccgaggtcacctcgctcggcctggtgcagatgacgcgcaagcggatcggc
accggcctgctggaggcgttcagcgagaactgcagccactgccagggccgcggcatcgtc
gtgcacgacctcccggtcgagccgaagcgcggtggcggcaaccagggcggcggcgagtcg
tccgaggagtcgcgtcgcccgagccggcgccgcaagggacgcggccagggcggcgagaac
ggcgcggccgaggccgccccgaagccggttccctcgccgaaggacgtcgccgcgatggcc
aagcaccacgacgaggtgcccgccgacgacgaggtgccggccgacgaggccgcaccggtc
gacgaggcggccaccgtggtcgaggaggcccctgtcgaggagacccctgtcgaggagacc
cctgtcgaggagacccctgccgaggtcccggccgcggtcgaggaggtcgtcgctccggag
ccggtggctgaggagccggtgactgaggagcccgcggctgaggagccggtgtccgaggag
ccggtggccgaggagcccgtcgcggctgccgaggagcaggtggtcgaggtggccgccccg
ctcgaggagcccgaggccgtcgtaccggagcccgaggcggctgccgagcccgagcccgag
ccggtcgccaccacgacggtggtcacccgcacgcggacccggcgcagcgcggcgacccgt
cccgccggcccgccggccgcgaccgaggcggcgcccgacgcagcgcccgaggcagcgcac
gaggcagcgcctgaggcaccggaggcagccgaccaggcggccgaccagccggccgaggag
ccgcacgtcgagcacgtcccgatcaagaagaagggcgcccgcaagcgctga
DBGET
integrated database retrieval system
