Nocardioides aromaticivorans: CFH99_22820
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Entry
CFH99_22820 CDS
T07236
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
naro
Nocardioides aromaticivorans
Pathway
naro03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
naro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CFH99_22820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
naro03400
]
CFH99_22820
Enzymes [BR:
naro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CFH99_22820
DNA repair and recombination proteins [BR:
naro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CFH99_22820
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
PhoH
Motif
Other DBs
NCBI-ProteinID:
QSR28461
UniProt:
A0ABX7PR34
LinkDB
All DBs
Position
complement(4789655..4793017)
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AA seq
1120 aa
AA seq
DB search
MDTLAPFDIRGPLPTGTTLLEASAGTGKTWTIGALVTRYVAEEGVPLEQLLVVTFGRAAS
QELREQVRHQLVEAERALADDAVPDPAATDVIQLLLDCPPDIRRLRHARVAQALADFDAA
TIATIHQFCSLVLDSLGVAGDTDARARLVEDLDDMLVEVVDDLYLRAFAHQPDGSAPVFQ
HSEAMAIARTVVNDPQAWLVPDDLPREDPAGRRVAFASAVRAELDRRKRRLGVLSYDDLL
SQLATALEPDDSPARVRMRERWRIVLVDEFQDTDPVQWQVFDRAFSGHSTMVLIGDPKQA
IYAFRGGDVTTYLTASGTATTRQTLGVNRRSDAGLLAGFQALLEGAELGDPRIVVREVTA
HHQESRLAGAPRPAPFRVRVVRRESFGRRGSTALPVGKVRPHIARDLAHDIRDLVTSEAT
FEGRRLRPSDVAVICYRHADLSAARAALLEVGVPAVIAGGGSVFATPAAGEWLSLLEALE
QPHRTPRVRAAALTCFLGYDAAGLDRGGDDLTDELGDRLRSWSEALARRGVAAVVEAAVS
GGMPERLLARVGGERTLTDIRHIGEVLHEVAQREQMGAVALLAWLREQVVEARDGRGAER
TRRLDSDAAAVQLVTIHASKGLQYPVVYLPALADRHVGKPQRPLFHDAEGRRCIDVGGSG
PDWGDHVRRWADEEAGEWLRLLYVALTRAQSQVVAWWAPTRNAEASPLHRLLMRRPAADG
KGMEPTVPPAPAVPDEDTVTSLFAAWRDRGGPSPEMAVPADHAGAFVPPEMPELGARSFT
RAVDTEWRRTSYSALSKVDVAATHGQPGVASEPEVAVKDDEDLSPAVEVRGAPAPSLETP
DALPSPMADLPVGATFGSLVHAVLEHADPGADDLRAELLAHIDDQLTWWPVELDREVLAD
ALVAVLDSPLGPLMDGATLRRIGARDRLCELDFELPLAGGDTGLAQDDTVLLGDIATLLR
RHLPADDPVRAYADALDNPLLGGQVLRGYLTGSVDVVLRVPGADGVRYVIVDYKTNWLGP
MDAPLTAASYDKAALEDAMGHSDYPLQALLYAVVLHRFLRWRQPGYDPERHFGGVAYLYL
RGMCGPETPVVDGSPAGVFTWRPPATLVAELSDLLDGVRP
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atggacacactcgcgcccttcgacatccgcggcccgctgccgaccggcaccaccctgctc
gaggccagcgcgggcacgggcaagacgtggaccatcggggccctggtgacccgctatgtc
gccgaggagggcgtgcccctcgagcagctgctcgtcgtgacgttcggacgtgcggccagc
caggagctgcgcgagcaggtgcgccaccagctcgtcgaggccgagcgcgcgctcgccgac
gacgccgtccccgaccccgcggcgaccgacgtcatccagctgctgctcgactgcccgccc
gacatccggcgcctccgccacgcgcgggtcgcccaggcgctggccgacttcgacgctgcg
acgatcgcgacgatccaccagttctgctcgctggtcctcgactcgctcggtgtcgcgggc
gacaccgacgcccgggcccggctggtggaggacctcgacgacatgctggtcgaggtcgtc
gacgacctctacctccgtgcgttcgcgcaccagcccgacggctcggcgcccgtcttccag
cacagcgaggcgatggcgatcgcccgcaccgtcgtcaacgacccccaggcctggctggtc
cccgacgacctgccccgcgaggacccggccggtcgccgggtggccttcgccagcgccgtc
cgcgccgagctcgaccggcgcaagcgccgcctcggcgtgctgtcgtacgacgacctgctc
agccagctcgccacggcgctcgagcccgacgactccccggcgcgggtgcggatgcgcgag
cgctggaggatcgtgctcgtcgacgagttccaggacaccgaccccgtgcagtggcaggtc
ttcgaccgcgccttctccggccactccacgatggtgctgatcggcgacccgaagcaggcg
atctacgccttccgcggcggcgacgtgacgacctacctcaccgcgtccgggacggccacg
acccgccagacgctgggggtcaaccgccgcagcgacgcgggcctgctcgccggcttccag
gcgctgctggagggagccgagctgggcgacccgcggatcgtcgtgcgcgaggtgaccgcc
caccaccaggagtcgcggttggcgggcgcgccgaggccggcgccgttccgggtgcgggtc
gtgcgacgggagagcttcggccggcgcggctccacggccctgcccgtcggcaaggtgcgc
ccccacatcgcccgggacctcgcccacgacatccgcgacctcgtcacgagcgaggcgacc
ttcgaggggcgccggctgcggcccagcgacgtcgcggtgatctgctaccgccacgccgac
ctgtccgcggcccgcgccgcgctgctcgaggtgggcgtcccggcggtgatcgccggcggc
gggagcgtgttcgcgaccccggcggccggcgagtggctctcgctgctggaggcgctggag
cagccgcaccggaccccgcgcgtgcgcgccgccgcgctcacctgcttcctcgggtacgac
gccgccgggctcgaccgcggcggcgacgacctcaccgacgagctcggcgaccggctgcgg
tcgtggtcggaggcgctggcccgccgcggcgtggccgccgtcgtcgaggcggccgtgtcc
ggtggcatgccggagcggctgctcgcccgggtcggcggcgagcggacactgaccgacatc
cgtcacatcggcgaggtgctgcacgaggtcgcgcagcgcgagcagatgggtgcggtcgcc
ctgctggcgtggctgcgcgagcaggtcgtcgaggcccgcgacggccgcggcgccgagcgg
acccggcgcctcgactccgacgcggccgccgtgcagctggtcacgatccacgcgagcaag
ggcctgcagtaccccgtcgtctacctccccgccctcgccgaccgccacgtcggcaaaccg
cagcggccgctcttccacgacgccgagggccggcgctgcatcgacgtcggcggctcgggc
ccggactggggcgaccacgtgcgccggtgggccgacgaggaggccggcgagtggcttcgg
ctgctctacgtcgcgctgacccgcgcgcagagccaggtcgtcgcgtggtgggccccgacc
cgcaacgcggaggcgtcgcccctgcaccggctgctgatgcgccggccggcggccgacggc
aaggggatggagcccacggtcccgccggcgccggccgtccccgacgaggacaccgtcacc
agcctgttcgccgcctggcgcgaccgcggtggtccgtcgccggagatggccgtgccggcc
gaccacgcgggtgcgttcgtgccgcccgagatgcccgagctgggcgcgcggtcgttcacg
cgggcggtcgacacggagtggcggcgtacctcctactcggcgttgagcaaggtcgacgtc
gccgcgacccacgggcagccgggggtggcgagcgagcccgaggtggcggtcaaggacgac
gaggacctctctccggcggttgaggtgcgaggcgcgccagcgccgagcctcgaaaccccg
gatgcactgccgtcgccgatggccgacctccccgtgggcgccaccttcggctccctcgtg
cacgcggtgctcgagcacgcagacccgggcgccgacgacctgcgcgccgagctgctcgcc
cacatcgacgaccagctgacctggtggccggtcgagctcgaccgcgaggtcctcgccgac
gcgctcgtcgcggtcctcgactcgccgctcggcccgctgatggacggcgccaccctgcgc
cggatcggcgcccgcgaccggctctgcgagctcgacttcgaactgccgctggccggcggc
gacacgggtctggcgcaggacgacacggtgctgctcggcgacatcgcgacgctgctgcgc
cggcacctgcccgcggacgacccggtccgcgcctacgccgacgcgctcgacaacccgctg
ctcgggggccaggtgctgcgcggctacctgacgggatcggtcgacgtcgtgctgcgggtc
ccgggcgccgacggcgtccgctacgtcatcgtcgactacaagacgaactggctgggcccg
atggacgccccgctcaccgccgcctcctacgacaaggctgccctcgaggacgcgatgggc
cactccgactaccccctccaggctctcctgtacgccgtcgtgctgcaccggttcctgcgc
tggcgccagcccggctacgacccggagcggcacttcggcggcgtcgcctacctctacctg
cgcggcatgtgcggaccggagacgccggtcgtcgacggttcccccgccggggtgttcacc
tggcgcccacccgcgacgctggtggccgagctgtccgacctgctggacggggtgcgaccg
tga
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