Numenius arquata (Eurasian curlew): 141462728
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Entry
141462728 CDS
T11436
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
narq Numenius arquata (Eurasian curlew)
Brite
KEGG Orthology (KO) [BR:
narq00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
narq04147
]
141462728 (COL18A1)
00535 Proteoglycans [BR:
narq00535
]
141462728 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
narq00536
]
141462728 (COL18A1)
Exosome [BR:
narq04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
141462728 (COL18A1)
Proteoglycans [BR:
narq00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
141462728 (COL18A1)
Glycosaminoglycan binding proteins [BR:
narq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
141462728 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
141462728
NCBI-ProteinID:
XP_074000802
LinkDB
All DBs
Position
3:43671357..43691030
Genome browser
AA seq
1747 aa
AA seq
DB search
MAPVSLRLEFLLLLACCFSSSEMQLLDWIWGSTKTMGSPAASGVGTTVLEPLTSAAASTQ
STSPGTWGVQVVEDVTTPQRQEPDPSTAAPAGEGTVAKTSKQRDGNATGLVESTAWPSIA
PPRSMSPAPGQDAASSSTKDPQFLGTGTTKDLQLLGMGDTEDLPLLGTGTPAAMRTQESL
QRPAGPRPGSAPFPFSPGDRTHKQAVPPRDPTVPPPQHSHGASPASPNPRHSTGRWGLGL
ADKNGSWSPPLPNRRAANSVDPPFADNSGPLKFDLLTAATRLYSSSGTGLVSFLPGLMLP
AGRCLPVPTRLSFCSVLGTKHFRLPNYLRHGSEAEIWAALHEWEGLLESQCHRYVEWFLC
LLLLPGCSALVPVTPPPCQGFCEAVRDLCWMHLAGGHLPLPCDALPEEDEGYSCVFINAS
AENLSTEVSLLELIGDPPPEEILKIYGPDNNPGYVFGPNANTGQVARYHLPSPFYRDFSI
LFHIQPTTPRAGVLFAITDSSQSIIYVGIKLSELRAGKQQIIFYYTEPGSPSSYAAATFT
VPTLLNQWTRFAISVEEDEVVLYLDCEEHERVRFERSPDEMELEDGSGLFVAQAGGADPD
KYQGVIADLKLQGDPRAAERQCEEEEDDTEEVSGDFGSGAEGGRQPSGKDRGVPGLVDAV
PVTSPPVAAGGGLKSSGGSPQQAERTRAEKTLQVSTGGTGPKGEKGEKGERGLKGDSGTG
SIVGMGSVKGEKGEKGELGVKGSAGFGYPGSKGQKGEPGNPGPPGTLSRHSDGSVVEQVT
GPPGPPGKDGAPGRDGEPGDPGEDGKPGDMGPQGFPGMPGEPGLKGEKGDPGVGPRGPPG
PPGPPGPPGPSSKPDKLTFIDMEGSGFGGDLESLRGPRGPPGPPGPPGVPGLPGEPGRFG
MNRTDLQGLPGLPGRDGTPGSSGPGPQGPPGRDGSPGQPGPKGEQGDVGDLGLPGAPGPK
GSKGETGPAGAPGEMGLAGLPGPIGPRGQPGPPGPPGPPGLGYEAGFGDMEGSGLPFAAS
SPGPPGPEGPQGVPGLQGIKGEVGSPGQPGLPGPKGDAGVPGMDGRPGLEGFPGPQGPKG
DRGSPGEKGERGQDGVGLPGPPGPPGPPGQDISVSSKDKSLVALPGPEGRQGRAGFPGPV
GPKGDQGPSGPQGSPGLKGEKGEPGVIISPDGTVVTAKVKGEKGEPGLQGPMGPSGPQGR
AGMKGEIGFPGRPGRPGMNGLKGEKGDPADVGSMLGLRGPPGPPGPPGPPGPPGSIVYDS
SNAFSDSGHPMLPAFPGFHQFQGQKGEKGDAGAPGPPGHFPYDPSHFGANLQGDKGEPGP
KGEKGEPGSTPLYGPSVPGLPGPPGPQGYPGLPGPKGDSIVGPPGPPGPQGPPGIGYEGR
QGPPGPPGPPGQPSFPGPHRQAISIPGPPGPPGPPGPPGTSGMSLGLHALPTYQAMLSAA
HELPEGGLIFLTDRQELYVRLRGGFRRVLLEEHNLIPSSALDNEVYDKPPRVHYAGPQPP
LQPRGPLHPLRNHSPPPTTRPWHRDEVVANQHRLPEQPLLHHQHELLNSYYIHRRPDPAP
VAAHVHQDFQPALHLVALNAPLSGSMRGIRGADFQCFQQARQVGLAGTFRAFLSSRLQDL
YSIVRRADRTTVPIVNLRDEVLFSNWEALFTGNEAPLRAGTRILSFDGRDVLQDAGWPQK
SIWHGSDAKGRRLPESYCETWRTEEHAATGQASSLGSGKLLEQVASSCQHTFIVLCIENS
FMTAAKK
NT seq
5244 nt
NT seq
+upstream
nt +downstream
nt
atggcccccgtttcacttcgtttggagtttctgctcctcctggcttgctgcttctcctcc
tccgaaatgcagctcctggactggatttggggcagcacgaagaccatgggaagcccagca
gcatcgggcgtgggaaccacagtgctggagccgctcacctctgcggcagcttccacccaa
agcacgtccccagggacatggggtgtccaggtggtggaggatgtcaccaccccacagcgc
caggagccggatcccagcacagcagcacctgcaggcgaggggaccgtggccaaaaccagc
aagcagcgggatgggaatgccacggggctggtggagagcacagcatggccaagcatcgct
cctccccgcagtatgtcacctgcccctggccaggatgcggccagcagctccaccaaggac
ccgcagttcctggggacagggaccaccaaggacctgcaactcctggggatgggggacacc
gaggatctgccgctcctggggacagggacccccgcagcaatgaggacacaggagtccttg
cagagaccggcaggccctcggccaggtagtgccccttttcctttctcaccaggtgacagg
acccataagcaggcagtgccaccccgggaccccacggtgccaccgccccaacacagccac
ggagcatcacccgcctcaccgaacccacggcacagcaccggccgctgggggctggggctg
gccgacaagaatgggagctggagccctcctttgcccaacaggagagcagctaacagtgtg
gatcctccttttgccgataactccggtcctcttaagtttgatttactaactgctgctaca
cgactctacagtagtagtggcacggggctcgtatccttcttacccggactgatgctgcca
gccggccggtgcctgcccgtcccgacccgcctgtccttctgcagcgtgctgggcaccaaa
catttcaggttaccgaattacctccgccacggcagcgaggcggaaatttgggcagctttg
catgagtgggaggggctgcttgaatcgcagtgccatcgctacgtggagtggtttctctgc
ttgctcctgctccccgggtgtagtgccttggtccctgtaacccccccgccgtgccagggc
ttctgcgaggccgtcagagatctgtgttggatgcacttggccggtgggcacctgcctctg
ccttgtgatgctctccctgaggaggacgaagggtattcttgtgtctttattaatgcttct
gcagagaacctgagcaccgaggtcagcctcttagagctgattggagaccccccaccagag
gagatcctcaaaatttatggccctgacaacaatcctggatacgtcttcggtcccaatgcc
aacacaggccaggtggcccggtaccacctgccaagccctttctaccgggacttttccatc
ctgttccacatccagcccaccacacccagggccggcgtgctctttgccatcacagactcc
tcacagagcatcatctatgtgggcatcaagctctcagagctgcgggcaggcaagcagcag
atcatcttctactacacagagccgggctcaccaagctcatatgcagcagccaccttcact
gtgcccaccttgctcaaccagtggacacgcttcgccatcagcgtggaggaggatgaagtt
gttctctacctggactgcgaggagcacgaacgggtccgctttgagcgctccccggatgag
atggagctggaagatggctccgggctctttgttgctcaggctggaggggctgacccagat
aaatatcagggggtgattgccgatttgaagctgcaaggggacccacgggcggccgagcgc
cagtgtgaggaagaggaggatgacaccgaggaggtctctggcgattttggcagcggggca
gaaggtggacgccaaccctcagggaaggacaggggtgttccggggctggtggatgctgtc
cctgtcacctctcctcctgtggcagcgggtggtgggctgaagagcagtggaggctcccca
cagcaagctgagaggaccagagcagagaagacactgcaggtctccacgggaggcacgggc
cccaaaggtgaaaaaggggagaagggcgagcgtggcctgaaaggggactcagggaccggc
agcatcgtggggatgggcagtgtcaagggtgaaaagggggagaaaggagaactgggtgtt
aagggcagtgccggatttggctaccctggctccaagggccagaaaggagagccaggtaac
cctggcccacccgggaccctctcacggcattctgacggctcggtggtggagcaggtcaca
ggtcccccagggccaccagggaaggatggagcccctggcagggatggcgagcccggtgat
cctggcgaggatggcaaacctggcgatatggggccccaggggttccccgggatgccgggg
gagcctggtctgaagggggagaagggtgacccaggcgtagggccaaggggaccccctgga
ccacccggtcccccgggacccccaggaccgtcatccaagcctgacaagctgaccttcatc
gacatggagggctcgggcttcggcggtgacctggagagcctgcggggtccacgagggcca
cctggtcccccagggccacctggtgtgcccggtttgccaggtgagccgggacggtttggg
atgaaccgcacagacctgcagggactgccagggctgccgggcagggatgggacccctggg
tcctcagggccaggtcctcagggtcctcccggaagagacggatcacctgggcagccaggg
cccaaaggagagcagggtgatgtgggtgaccttggcctccctggcgcaccaggacccaag
ggcagcaagggagaaacaggaccagcaggagccccaggagaaatggggttagctggcctt
cctgggcccattggaccccgagggcagccagggccccctggtcccccaggaccaccgggg
ctgggctacgaggctggatttggtgacatggagggctcagggcttccgtttgctgccagc
tcccctggaccacctggccccgaaggaccacagggggtgcctggactgcaggggataaag
ggggaggttggcagccccgggcagcctggattgccaggaccaaagggagatgctggtgtg
cctggcatggatggccgccctggcctggagggcttccccggaccacagggacccaaaggt
gacagaggcagtcccggtgaaaagggtgagcgaggccaagatggtgtggggctgcctggc
ccccctggtccacctggtccccccggacaggacatctctgtctcaagtaaagataagtct
ttggtggctttgcctggtccagagggcagacagggtcgcgccggcttcccgggcccagtg
ggaccgaaaggagatcaggggccatctggtccccaggggtccccagggttgaagggtgag
aagggggagcccggggtcatcatcagccccgatgggacagtggtcactgcaaaggtgaaa
ggagaaaagggggagccagggctgcagggaccaatgggaccctcgggtccccagggacga
gcagggatgaagggagagattggctttccaggcagacccggacgtcctggcatgaatggg
ctgaagggtgagaagggtgaccccgcggatgtcggtagcatgctgggcttgcggggtccc
ccaggacccccagggcctccagggccccctgggccacctggcagcatagtctacgacagc
agcaatgccttcagtgactctggacatcccatgctgccagctttccccggtttccaccag
tttcaaggacaaaagggagagaaaggtgatgccggagcaccaggacccccaggccacttc
ccctacgacccgagtcactttggtgccaacctgcagggtgacaagggggagccaggtccc
aagggtgagaagggcgagccaggcagtaccccactctatggtcccagtgtccctgggctg
ccagggcctccagggccccagggctaccctgggctgccgggtcccaagggggacagtatc
gttgggccgccagggcctcctggacctcagggcccccctggtattgggtatgaggggcgg
caaggcccccctggccctcccggtccccccggtcaaccctccttcccaggcccccacaga
caagctatcagcatccctgggccccccggaccaccagggccccccggaccaccaggcacc
agcggcatgtccttggggctgcacgccctgccgacctaccaggcaatgctgagtgccgcc
cacgagctgcccgagggaggcctcatctttctgacggaccggcaagagctctacgtccgt
ctgcgcgggggcttccgccgggtgctgctggaggagcacaacctgatccccagctcggct
ctggacaatgaggtgtatgacaagccccccagagttcactatgctggccctcagcccccg
ctccagccccgtggacccctgcatccccttcgcaaccacagcccaccacccaccacccga
ccctggcacagggacgaggtggtggccaaccagcaccgcctgcctgagcaacccctgctc
caccaccagcatgagctcctcaacagctactacatccaccgccgcccagatccagccccc
gtggctgcccacgtgcaccaggacttccagcctgctcttcacctggtggccctgaatgcc
ccactgagtggcagcatgcgtggcatccggggtgctgacttccagtgcttccagcaagcc
cggcaggttgggctggctggcaccttccgcgccttcctctcctcccgcctgcaggacctc
tacagcatcgtgcgcagggccgaccgcaccaccgtgcctattgtcaacctccgggacgaa
gtgctcttcagtaactgggaagcccttttcacgggcaatgaggccccactgcgagctggc
acccgcatcctctccttcgatggccgggatgtcctgcaggatgcaggatggccacagaag
agcatttggcacggctcagatgccaagggccggcgtttgcctgagagctactgtgagaca
tggcggacggaggagcatgctgccaccggccaagcttcctcactgggctccggcaagctg
ctggagcaggtggccagcagctgccagcacaccttcattgtcctctgcatagagaacagc
ttcatgactgccgccaaaaagtga
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