Numenius arquata (Eurasian curlew): 141464550
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Entry
141464550 CDS
T11436
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
narq Numenius arquata (Eurasian curlew)
Pathway
narq04382
Cornified envelope formation
narq04510
Focal adhesion
narq04512
ECM-receptor interaction
narq04518
Integrin signaling
narq04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
narq00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
141464550 (COL4A6)
04518 Integrin signaling
141464550 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
141464550 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
141464550 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
141464550 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
narq04147
]
141464550 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
narq00536
]
141464550 (COL4A6)
Exosome [BR:
narq04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
141464550 (COL4A6)
Glycosaminoglycan binding proteins [BR:
narq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
141464550 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
141464550
NCBI-ProteinID:
XP_074003622
LinkDB
All DBs
Position
5:complement(12722577..12809564)
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AA seq
1676 aa
AA seq
DB search
MNGGKKSYSGPCGGRDCSAGCKCFPEKGARGRPGPIGLQGPIGAPGFTGPEGLPGAKGER
GAVGPPGPAGQKGDKGPMGVPGFQGINGIPGHPGQSGPRGLPGLDGCNGTAGSPGVSGSD
GFPGLPGLPGRPGPKGHKGEPVFAQGSLKGMKGENGLPGLDGISGPKGFPGPIGSAGPIG
LPGLQGPVGPPGPPGPKGNMGLGFQGEKGEKGDVGLPGPPGPPPSTGILEFMGFPKGKQG
EKGVPGPQGLPGDKGLPGMPGFGGVGEKGEKGVPGLPGARGLLGLDGSDGIPGRKGHPGI
PGYPGLDGVEGMKGELGDIGPPGPPIVIDREGVVISGAPGDPGNQGTPGPPGDEGISGLP
GLPGAPGFPGLERDGMGPGGSPGIPGVKGEVGEPGRATIGLPGTPGREGLPGLPGAPGLP
GSPRPSFPPDTILDGRTGPPGEPGQRGLPGALGPKGYKGEAGDCACDGGVTRAGLKGISG
PPGPSGSPGVPGIKGIGGDPGTVGAPGLRGPPASAGQQGFPGLKGEKGDSSYATGRGARG
DRGATAPRGPSGIPGTPGRDGLPGLPGPPGPPGDGGLGFPGEKGLPGLPGSKGHRGGTGS
PGVGYPGPSGVRGPPGDPGMDGFPGQAGLPGPPGITLPCIVPGAYGPPGTHGFPGLPGPK
GSKGFPGIPGQPGLHGSKGQPGSPGILGLQGEPGFPGPRGEQGSQGLPGLDGTDGLPGKM
GASGLAGTKGAPGDVFGAESGALGERGRPGLPGDKGLAGDLGFPGPKGLDGRPGLLGTKG
EQGNPGYSGVPGLRGPPGPGGPFGVKGKPGPLGSAGLAGAPGCQGLPGVKGMTGDVGPQG
PAGMKGFPGLDGAPGSPGERGFLGPPGPFGQDGHPGFSGPKGEKGSPGLLGFPGMPGLPG
VPGVNGFKGTPGTAGGKGSPGVMGLQGQKGDRGDVGPPGLPVLGPPEQALQFKGDKGDPG
LAGLGGFPGPRGDKGVPGSRGQPGLPGPIGTASKEKGLHGDPGFPGPPGQPGLPGQKGTH
GIIGFPGMPGERGSDGITGTLGFPGPIGVPGPKGDQGESVGIPGTAGAKGERGDPGFPGE
RGREGLKGEPGYPGNTGVSGLKGGPGDLGQEGPAGIPGNAGLRGIPGPPGPPGQPGSVGI
PGARGTAGPKGFHGFPGLNGLNGLPGTKGSPGTPGLSEAGLKGPAGLPGPKGEEGSPGLG
RGALGFPGPKGSSGDMGPPGPVGLPGLPGKPGVSLPSDIRGRPGDAGHPGTDGSSGLPGP
PGPRGPPGPASDQGDTGNPGFPGVLGLRGIKGDVGPTGPIGLPGASGFKGIRGEPGLMGM
PGKDGPPGDPGYPGLKGEMGRRGLPGRQGAPGITPQPEEVTAPAGLPGLPGIDGVPGFDG
DPGFQGPAGKPGTKGPPGRSGLKGHDGLPGSPGIAGDPGPSGAPGPQGFEGVAGKPGSLG
LPGMPGRSVGVGYTLVKHSQSDQIPPCPIGMTKLWDGYSLLYVEGQEKSHNQDLGFAGSC
LPRFSTMPFIYCNINEVCYYASRNDKSYWLSTTAPIPMMPVDSVQIPPYISRCSVCEAPS
QAVAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIE
CNGARGTCHYFANKYSFWLTTVEQSQQFVSAPPSETLKAGQLRTRVSRCQVCMKNL
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atgaatggtggaaagaagtcttacagtgggccatgcgggggccgcgattgcagtgctgga
tgcaaatgttttccagagaagggggcgcggggtcgaccaggaccaattgggcttcaagga
ccgataggtgcacctggatttactggcccagagggtttaccaggagcaaaaggtgagaga
ggagcagtgggcccccctggaccagctggacagaagggcgacaagggcccaatgggagtt
ccaggatttcaaggcatcaatgggatcccaggtcaccctggacaatctggacctagaggt
ctgcctggcctcgatggctgcaatggtaccgctgggagtcctggcgtttctggatcagat
gggtttcctggcctgcctgggctgcctggtcgtcctggcccaaaaggccataaaggagaa
cctgtttttgctcaaggcagtcttaaaggaatgaagggagaaaatggtcttcccggattg
gatggaatttctggcccgaaaggttttccaggtccaataggttctgcgggccctatagga
ttaccaggtttgcagggtcctgtgggtccccctgggccaccaggtccaaaaggtaacatg
ggattaggctttcaaggagagaaaggagaaaagggtgatgtagggctgcctggccctcca
ggtcccccaccatccactggaatactggaattcatgggatttccaaaagggaagcaagga
gaaaagggtgtgccaggccctcaaggactccctggagacaaaggattgcctggcatgccg
ggttttggaggtgttggagaaaaaggagaaaaaggcgtgcctggtttaccgggtgccagg
ggtcttttgggactggatggatctgatggaattccagggagaaagggtcatccaggtatt
ccaggctatccaggactggatggagttgaaggcatgaagggtgaattaggtgacatcggt
cccccaggccctcctatcgttattgacagggaaggtgtagtcatttcaggtgccccaggc
gaccctggaaaccagggaacacctggtcctccaggagacgaagggatcagtggtttacca
ggccttccaggagctccagggtttccaggcctggagagagatggaatgggccctggaggg
tctccaggtattccaggtgtgaagggtgaagtgggagaaccaggaagagcaacaattgga
ttaccaggcactcccggcagagaaggtttaccaggtctgccaggagcaccaggattgcct
ggttcaccacgcccttcattcccaccagacactatcctggatggaaggactgggcctccg
ggggagcctgggcaaagagggctgccaggagctttgggtccaaaggggtacaaaggggag
gcaggtgattgcgcttgtgatggaggagttacaagagctggtctaaaaggcatttcaggt
ccaccaggtccatcaggaagccctggtgtgcctgggattaagggcattggtggagaccca
ggcactgtgggtgcaccaggactgcgaggccctccggcttcagctggtcagcaaggtttt
ccaggccttaagggagaaaaaggggattcatcctacgcaacaggcagaggtgctcgtggg
gaccgtggtgcgacagcacccagaggaccttcaggcatcccaggaacccctggcagggac
ggacttccaggcttgccaggcccaccaggccctccaggtgatggtgggctaggtttccca
ggtgaaaaaggactgccaggattacctggctccaagggccatcgtggaggaactggttct
cctggcgttggatatccaggtcctagtggagttcgtgggccaccaggtgacccaggaatg
gatgggtttccaggacaagcaggtcttccaggccctccaggtatcaccttgccctgcata
gttcctggagcatacgggcccccagggactcacggctttccaggattgccaggtcccaaa
ggcagcaaaggctttcctggcattccaggccaacctggattacatgggtcaaaaggacag
ccagggtctccaggaatactaggcttgcaaggggaacctggcttccctgggcctcgagga
gagcaagggtcacaagggcttccagggctggatggaacagatggtttgcctggaaaaatg
ggtgcttcaggcttagctggaacgaaaggagctcctggagatgtatttggtgctgagagc
ggagccctgggagagcgtggccgacctggactcccaggtgataaagggcttgcaggtgat
cttggatttccaggaccaaaagggttagatggaagaccaggcctcctaggtactaaaggc
gaacagggtaatccaggatattcgggtgtccctggattgcgaggacctcctggtcctgga
ggcccttttggcgttaagggaaaaccaggacctttggggtcagctggccttgcaggagca
ccaggctgtcaaggacttcctggagtcaaaggcatgaccggggatgtaggtccacaaggc
cctgctggtatgaaaggcttcccaggtcttgatggtgctccaggatctcctggggaaaga
ggattcttaggcccaccggggccttttggtcaagatggacatccaggtttctctgggcca
aaaggtgagaaaggctctcctggcctgcttggtttccctggcatgccaggcctgcctggt
gtccctggcgtgaatgggtttaaaggaactcctggtacagctggaggaaaagggagccct
ggagttatgggactccagggtcaaaaaggtgacagaggtgatgtaggtccacctggcctt
cctgttcttgggcctccagaacaggcgctgcagttcaaaggagacaaaggagatcctgga
ttagctggacttggaggattccctggacctagaggtgataaaggagtcccaggaagccgt
ggacagcctggtctccctggtccaattgggacagcaagcaaagagaaaggtcttcatggt
gatccaggcttccctggtccacctggacagcctgggctgccagggcagaagggtacacat
ggtatcataggatttccaggaatgccaggagagaggggttcagatggtatcacaggaaca
cttggattcccaggacctattggcgtccctggtccaaagggtgaccagggagagtctgtt
ggcattcctggcactgctggagcaaaaggagagcgaggggacccgggattcccaggagag
agagggagagaaggactcaagggtgaaccaggctacccaggaaatactggggtcagtgga
ctcaaaggcggcccaggagatcttggccaagaaggaccagcaggaatccctggaaatgct
gggctgagaggaatccctgggccaccaggacctccagggcagccaggatctgttggaatc
cctggagctcgtggaacagcaggacctaaggggtttcatggatttccaggtttgaacggt
ctgaatggcttgccaggcacaaaagggtctcctggaacaccaggtctgagtgaagctgga
ctgaaaggccctgcaggtctcccaggtccaaagggtgaagaaggttctccaggcttgggt
agaggagctctaggattccctggaccaaaaggctcatcaggagacatgggtccccctggt
cctgtgggactacctggcttaccaggaaaacctggagtttctcttccttctgatatacgt
gggagacctggggatgctggccatccaggaactgacgggagttcaggtcttccaggtcct
ccaggaccacgagggcctcctggcccagcttctgaccaaggtgacacaggcaatccaggt
ttccctggtgttcttggcttgcgaggcattaagggtgacgtgggacccactggtccaatt
ggactccctggagcatctggattcaaaggtataagaggggagcctggccttatggggatg
ccaggtaaagatgggcctccgggggatcctggttaccctgggctgaaaggtgaaatgggc
cgtcgaggtctccctggccgacaaggggctccaggtataaccccacagccagaagaagtc
acagcccctgcaggcttacctggtctgccaggaattgatggggtccctggctttgatgga
gatcctggattccagggcccagctggaaaaccaggtacaaaaggtccaccaggaagatct
ggtttgaaaggacatgatggtttacctggatctcctggcatagctggggatccaggacct
tcaggtgccccaggaccacaaggatttgaaggtgttgctggaaagccgggctcacttggt
ttgccgggaatgcctggtcggagcgtgggcgttggatacactttagtgaagcacagtcag
tcagaccaaatcccaccttgtcccatagggatgaccaagctctgggatggctacagctta
ctgtatgtggaggggcaggaaaagtcacacaaccaggatcttggttttgctggctcatgt
ttgcctcgcttcagcaccatgccttttatttactgcaacataaatgaagtgtgctactat
gccagccgaaatgacaagtcctactggctctccaccactgctcctatccccatgatgcca
gtggacagcgttcagatcccaccgtacatcagccgttgctcagtttgtgaagcgccttcc
caagctgtggctgtgcacagccaggacatcaccatcccacagtgtcccctcggctggcgc
agcctatggataggatactccttccttatgcacactgcggctggtgcggaaggtggaggt
cagtcccttgtctcgcctggttcttgcctggaggatttccgtgctactccgttcattgaa
tgcaacggcgctaggggaacgtgccattactttgcaaacaaatacagcttctggctgaca
accgttgaacagtcgcagcagtttgtcagcgctcctccctcagaaactctgaaagcagga
cagcttcgaacaagggtcagccgttgccaagtgtgcatgaagaacttgtag
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