KEGG   Numenius arquata (Eurasian curlew): 141465653
Entry
141465653         CDS       T11436                                 
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
narq  Numenius arquata (Eurasian curlew)
Pathway
narq03420  Nucleotide excision repair
narq04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:narq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    141465653 (DDB1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    141465653 (DDB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:narq04121]
    141465653 (DDB1)
   03400 DNA repair and recombination proteins [BR:narq03400]
    141465653 (DDB1)
Ubiquitin system [BR:narq04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     141465653 (DDB1)
DNA repair and recombination proteins [BR:narq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      141465653 (DDB1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      141465653 (DDB1)
SSDB
Motif
Pfam: CPSF_A Beta-prop_RSE1_1st Beta-prop_RSE1_2nd Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 141465653
NCBI-ProteinID: XP_074005309
LinkDB
Position
6:1983907..2000919
AA seq 1140 aa
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
TAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSQRE
TDNTLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPNGKNISVASCNSNQVVVAVGRALYYLEIRPQELRQISCTEMEHEVAC
LDITPLGDTNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSTSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcctacaactacgtcgtcacggcccaaaagccgacggccgtgaacggctgcgtcacc
ggccacttcacctcggcggaggatttgaacctgctgatcgccaagaacacgcgcctggag
atctacgtggtgacagcggaggggctgcggcccgtcaaggaggtggggatgtacggcaag
accgccgtcatggagctcttccgccccaagggggagagcaaggatttgttgttcatcctg
acggccaagtataacgcctgcatcctggagtacaagcagaacggggacagcatcgatatc
atcacccgcgctcacggcaacgtgcaggatcgcatcggtcgtccctcggagaccggcatc
atcggcatcattgaccccgagtgccggatgatcggcttgcggctctacgacggcctcttc
aaggtcatccccctggaccgggagaacaaggagctaaaggcttttaacatccgcctggaa
gagcttcaagtcatcgatgtgaagttcctctacggctgtcaggctcccaccatctgcttc
gtctaccaggaccctcaggggcgccacgtcaagacgtacgaggtgtccctgcgtgagaag
gagtttaacaaagggccttggaaacaggagaacgttgaggccgaagcctccatggtcatc
gcagtgccagagccttttggaggcgccatcatcatcgggcaagagtctatcacctatcac
aacggagataaatatctggctatagctccaccgatcatcaagcaaagtacgatcgtatgc
cacaaccgagtggatcccaacgggtcccgttacctgctgggggacatggaaggacgcctc
ttcatgctgctgctggagaaagaggagcagatggatggcactgtcaccttgaaggatctg
cgggtggaactgctcggcgagacatccattgcagagtgtctgacctacctggacaatgga
gttgtgtttgtcgggtctcggcttggggattcccagcttgtgaagctcaacgtggacagc
aacgagcagggctcctatgtggtggcaatggagaccttcaccaacctcggccccatcgtc
gacatgtgcgtggtggacctggaaagacaaggccaagggcagctggtcacgtgctcgggc
gcgtttaaagagggatcgctgcggatcatccgcaacggcatcgggatccatgaacacgcc
agcattgatttaccagggattaaaggtttgtggcccctgaggtcggactctcagcgggaa
acggacaatacgttggtgctgtcctttgttggccagaccagggtccttatgttgaacggg
gaggaagtagaagagacggagctcacggggttcgtggatgatcagcagactttcttctgt
ggcaacgtggctcatcagcagctgatccagatcacctctgcctctgtgagactggttagt
caggagcccaaagccctggtgagcgagtggaaagagcccaacggcaagaacatcagcgtg
gcttcctgtaacagcaaccaggtggtggtggctgtgggacgagccctgtactacctggag
atccgaccccaggagctcaggcagatcagctgcacagagatggagcacgaagttgcctgc
ctggacatcacccctctgggggacactaatggcatgtccccgctgtgtgccatcgggctc
tggacagacatctctgcccgcatcctaaagctgccctcgtttgagctgctgcacaaggag
atgctgggaggagaaattatccctcgttccatcctgatgaccaccttcgagagtagccat
taccttctgtgtgccctgggggacggagctctcttctactttgggctcagcctggagaca
ggtttgctgagtgacaggaagaaggtgaccctggggacccaacccaccgtcctgaggact
ttccgctctctgtccaccaccaacgtctttgcctgctccgaccgccccaccgtcatctac
agcagcaaccacaagctggtcttctccaacgtcaacctgaaggaggtcaactacatgtgt
cccctcaactcggacgggtatcccgacagcttggccttggccaataacagcaccctgaca
atcggcaccatcgacgagatccagaagcttcacatccgcacggttcccctctatgaatcg
cccaggaagatctgctaccaagaggtatcgcagtgtttcggggtgctctcgagtcgcatc
gaggtgcaggatgccagcggaggcaccactgccctcagacccagcgccagcacccaggcc
ttgtccagcagcgtgagcaccagcaaactcttctccagcagcacggcgccacacgagacg
tcctttggagaggaggtggaggtgcacaacctgctcatcatagatcaacacaccttcgaa
gtgcttcacgctcaccagttcctgcagaacgagtatgccctcagcctggtctcctgcaag
ctgggcaaggatcccaacacctacttcatcgtgggcaccgccatggtgtatcccgaggag
gcggagcccaagcagggtcgcatcgtcgtcttccactactctgacgggaagctgcagagc
ctggctgagaaggaggtcaagggagccgtgtattccatggtggaattcaacgggaagctg
ttagccagcatcaacagcacggtgcgcctctacgagtggacggcggagaaggagctgcgc
acggagtgcaaccattacaacaacatcatggccctctacttgaagaccaagggagacttc
atcctcgtgggagacctgatgcgctccgtcctcctccttgcctacaagcccatggaagga
aacttcgaggagattgccagggacttcaatccaaactggatgagcgccgtggagatcctg
gacgacgacaacttcttgggagcggagaacgctttcaatctctttgtctgccagaaggac
agtgcggccaccaccgatgaggagcgccagcatctgcaggaggtgggactgtcccacctg
ggagagtttgtcaacgttttctgtcacgggtctctggtcatgcagaacctgggtgagaca
tccacgcccacccagggctccgttctcttcggcacggtcaacggcatgatcggactggtg
acctcgctgtcggagagctggtacaacctcctcctggacatgcagaacagactgaataaa
gtcatcaagagcgtgggcaagatcgagcattccttctggagatcgttccacaccgaacgc
aagacggaaccggccacgggtttcatcgacggcgacctgatcgaaagcttcctggacatc
agccggcccaagatgcaggaggtggtggcaaatttgcagatcgatgacggcagcggcatg
aagagagaggccaccgtagacgacctcatcaagatcgtggaggagctgacccgcatccat
tag

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