Numenius arquata (Eurasian curlew): 141470819
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Entry
141470819 CDS
T11436
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
narq Numenius arquata (Eurasian curlew)
Pathway
narq03015
mRNA surveillance pathway
narq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
narq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141470819 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
141470819 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
narq03019
]
141470819 (PABPC1L)
03041 Spliceosome [BR:
narq03041
]
141470819 (PABPC1L)
Messenger RNA biogenesis [BR:
narq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
141470819 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
141470819 (PABPC1L)
Spliceosome [BR:
narq03041
]
Complex C
Other components
Complex C specific factors
141470819 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RBD_DEAH11
RRM_RdRP1_2
RRM_3
ATP-grasp_2
DUF6262
Motif
Other DBs
NCBI-GeneID:
141470819
NCBI-ProteinID:
XP_074013183
LinkDB
All DBs
Position
12:11036144..11047101
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AA seq
635 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQ
QPVDAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFS
AFGNILSCKVVCDENGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKERE
AEFGARAMEFTNVYIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDNTGRSKGFGFVNFEK
HEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQIKQERVSRYQGVNLYVKN
LDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLATMRALPGPLLGSFQPPPGYFLPPIPQPQTRAAF
YSPSPVVPVRPATRWSAQPSRPPPAYPAATPILRAAAPPRRLLSNISTMRQASTQVPRVP
PQAQRVANIGTQTVSARVPSSPTLPRGAPQYKYSSAVRNVQPMGHMPPVVAPQVGEPAVH
IQGQEPLTASMLAAAPPQEQKQMIGERLYPLIHALHPSLAGKITGMLLEIDNSELLLLLE
SPDSLRSKMEEAVAVLQAHQATETSHKSSAAAFLQ
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctagcggccctggctacccgttagcctctctctatgtgggagacctccacccg
gacgtgaccgaagccatgctctatgagaagttctcacctgctgggcccatcatgtccatc
cgagtgtgtcgggacgttgccacccgccgatcgctgggctatgcctacataaacttccag
cagcctgtggatgctgagcgagccctggacaccatgaactttgaagtgatcaaaggccgt
cccatccgtatcatgtggtcccagcgggaccctgggctcaggaagtcgggggttggaaac
gtcttcatcaagaacctggatgactccattgataacaaagccctgtacgacacgttctcc
gcctttggaaacatcctgtcatgcaaggtggtttgtgatgaaaacgggtcccgtggctat
ggctttgttcactttgagactcatgaggcagcaactcgggccatcgagaccatgaatggg
atgttgctcaacgaccggaaggtgtttgttggccatttcaaatcccgcaaagagcgcgag
gctgagtttggggctcgggcgatggagttcaccaacgtctacatcaaaaactttggggat
gacatggatgacgacagactgcgggaaatattctccaagtttgggaagacgctaagtgtc
aaagtcatgatggacaacactggccgctcgaagggcttcgggtttgtcaactttgagaag
catgaagaagcccagaaggcagtagccgacatgaacgggaaggagatcaatgggcggatg
gtgtacgtgggccgagcccagaagcggctggagcgccagagcgagctgaagcggaaattt
gagcagatcaagcaggagcgagtgagcaggtaccagggggtcaacctgtatgtgaagaac
ctggatgatgggatagatgacgagaggctgaggaaggagttctctccctacggcactatt
accagcgccaaggtgatgacagagggtggccacagcaaagggtttgggtttgtatgtttt
tcctccccagaagaggctaccaaggccgtgacggaaatgaacgggcggattgtcagcacc
aagcctctctatgtcgcgctcgctcaaaggaaagaggagcggaaagcaatcctcaccaac
cagtacatgcagagattagccaccatgagggccctgcctggccctctcctgggctccttc
cagccccccccggggtacttcctaccccccatcccccagccacaaaccagagctgccttc
tacagccccagtccagttgtcccagtccgtcctgccactcgctggagtgcgcagccctcc
cggcctcccccagcgtatcctgccgctacccccatcctgagggctgctgcgccaccccgg
cgcctgctgtccaacatcagcaccatgagacaggcctccacccaggtgccccgtgtgccc
ccccaggcccagagagtggccaacattgggacgcagacggtcagcgctcgggtgccctcc
tcacctaccctgccgcggggcgccccgcagtacaagtactcctcagctgtcaggaacgtc
cagcccatggggcacatgccgccggtggtggctccgcaggttggagaacctgctgtgcac
atccagggccaggagccactgacggcatccatgcttgcagcagcccctcctcaggagcag
aagcaaatgataggtgagcgcctctaccctctgatccacgcgctgcatccctcactggcc
ggcaagatcactgggatgctgctggagatagacaactccgagctgctgctcctcctggag
tcccctgactccctgcgctccaagatggaggaagcggttgctgttctccaagcccaccag
gctaccgagacctcgcacaagagcagcgctgccgccttcctgcagtga
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