Numenius arquata (Eurasian curlew): 141474894
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Entry
141474894 CDS
T11436
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
narq
Numenius arquata (Eurasian curlew)
Pathway
narq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
narq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141474894 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
narq03041
]
141474894 (DDX42)
Enzymes [BR:
narq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141474894 (DDX42)
Spliceosome [BR:
narq03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
141474894 (DDX42)
Complex B
141474894 (DDX42)
Complex C
U2 SnRNP specific factors
141474894 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
141474894
NCBI-ProteinID:
XP_074019092
LinkDB
All DBs
Position
23:4584163..4602635
Genome browser
AA seq
946 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPDSPIAAAAAAKGVPGFTSTGNLSSVPT
FPSVGVQGFNNTGGSANNREGSGSTGVSTAGGSGGGVGGGGGVGGTVRERYNDNRNSRHN
EVPRRGEGGSRYNDVQRHGEGGGRHSDVYRHAEGRHGDSHRHGESRHLADMGSGNRNNGD
NRNSTEGRNNENRNGENRKDANSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggaactaagagaggctttgggtttggtggatttgcc
ataacacctgggaaaaaagaggagcctaagctctctcaacagtctcacagcgcttttgga
acagccggttcttctgctgcatttgcgaaatcaggacctcctcagctgccttctttctac
aaaattgggtcaaagcgagcaaattttgatgaagagaatgcgtattttgaggatgaagag
gaagattccagcaatgtcgaattgccatacattcccgcagagaattcccccactcgccag
cagtttcattccaaatcagcagactctgacagcgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagaggcttgaagataaagacaaagaa
aaaaagaatgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgctacatggctgaaaaccccactgctggtgtggtccaagaagaggaagaggataac
ctggagtatgatagtgatgggaatccaattgcaccatccaaaaaaatcattgatcctctt
ccgcctattgaccattcagagatcgaatatccaccgtttgagaaaaatttctatgatgag
catgaggagatcaccagtctcaccccgcaacaagtggtggagctacgtcacaagctaaat
ctccgggtctccggtgctgctcctccaaggcctggcagtagttttgctcattttgggttt
gatgagcaacttatgcatcaaattaggaaatcggagtatacccagcccacccctatacag
tgtcagggtgttcctgttgcactgagtggcagagatatgattgggattgctaagactgga
agcggaaaaacagcagccttcatctggccgatgttgattcacatcatggatcaaaaggag
cttgaaccaggggatggtcccattgcggtcatcgtatgccccaccagagagctttgccag
cagatccattctgaatgtaagcgcttcgggaaggcatataatctgcgctcggtggctgtg
tacggaggaggaagcatgtgggagcaagccaaggccctccaggagggggcagagatagtt
gtctgcacaccaggtcgtttaattgatcatgtgaaaaagaaagctacgaaccttcagaga
gtcacttacctcgtgtttgatgaagctgaccgaatgtttgatatgggttttgaatatcag
gtcagatcaatcgcaagccacgtacgtcctgacagacagaccctcttgttcagtgccacg
ttccgcaagaagattgagaaattggctcgagatattctgatcgacccaattcgagttgtg
cagggagacattggagaggcaaatgaagatgttactcaaattgtggagatcttcccctct
ggccctagcaaatggaactggctgactcgacgccttgtggagttcacatcttctgggagc
gttctcctctttgtcaccaagaaggcgaatgcggaagagctggccaataacctgaagcag
gaggatcataacctggggcttcttcacggtgacatggaccagagtgagaggaataaagtc
atttcagaatttaagaaaaaggggatcccgatactggtagctactgatgtggcagcccgt
gggttagatattccttccattaagactgtcatcaattacgacgtggctcgggacatagac
acgcacacccatagaatcggtcggactggcagagctggggagaagggggttgcctacact
ctgctgactcccaaggacagtaactttgctggtgatcttgtcaggaacctggaaggtgct
aatcaacatgtttccaaagagctgttggatctagcaatgcagaatccatggttccggaaa
tcacgtttcaaaggaggaaaaggcaagaagctgaatattggtggtggtggcttaggctac
cgtgaacgtcctggtctgggatcagaaaattctgaccgtggaaacaacaacagcgtgatg
agtaactacgaggcctacaagccatccaccggggcgatgggagacagacttacggcaatg
aaagcagcttttcagtcccagtataagagccactttgttgccgcaagcttaaataatcaa
aagactggtagctccgctgctggtgccagtggctggaccagcgctgggagcttgaactca
gtgccgacgagttcagcacagcaaaacgctgcaaaccctgacagcccgattgcagccgcc
gcagcggcgaagggtgtcccgggtttcaccagcacggggaatttgagcagcgttcccact
tttccaagcgtcggagtacagggcttcaacaacaccggtggcagcgccaacaatcgagaa
ggcagcggcagcactggcgtttccactgctggtggcagtggtggtggtgttggtggcggc
ggtggtgttggtggcactgtcagagaacgctacaacgacaaccggaacagtcgtcacaat
gaggtcccgcgccgcggagagggcggcagtcgctacaatgatgtgcaacgccacggagag
gggggcggtcgccacagtgacgtttaccgccacgcagagggccgacacggcgacagccat
cgccacggggagagccggcacctcgccgacatgggcagcggcaatcgcaataatggtgat
aacaggaatagcaccgaaggtaggaacaacgagaacaggaatggcgagaacaggaaggat
gccaacagccgagacaacaagacagatggttttgctgtcccagagcccccaaaacgtaag
aagagccggtgggacagttaa
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