Numenius arquata (Eurasian curlew): 141475327
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Entry
141475327 CDS
T11436
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
narq Numenius arquata (Eurasian curlew)
Pathway
narq03013
Nucleocytoplasmic transport
narq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
narq00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
141475327 (UPF1)
03015 mRNA surveillance pathway
141475327 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
narq03019
]
141475327 (UPF1)
Enzymes [BR:
narq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
141475327 (UPF1)
5.6.2.5 RNA 5'-3' helicase
141475327 (UPF1)
Messenger RNA biogenesis [BR:
narq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
141475327 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
141475327 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
141475327
NCBI-ProteinID:
XP_074019744
LinkDB
All DBs
Position
25:4778768..4799929
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AA seq
1117 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQG
PPGAGQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFD
RMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKT
VLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV
VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRT
AERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVG
DHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSL
QNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLL
KAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSC
VRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEG
PLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQ
THDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQ
KNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDS
YLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcactctc
cccagccagacccaaaccccgcccgggcccgggcaggcggggccgggacagggccaaggg
cctcccggagcggggcaaggaccgccgggaccgatcgaagcgcaggttaatggacctgat
ggcattctgcagaacggagctgtggatgataacgtggctaaaaccagccagcttctggca
gagctgaattttgaagaagatgaagaagatacctattacacaaaggatcttcctgtgcat
gcttgcagttactgtggcatccatgaccccgcttgtgtggtttactgtaacaccagcaaa
aagtggttctgtaacgggcgtggaaatacatctggcagccacattgttaatcatcttgtg
agagcgaagtgcaaagaggtgactctccataaagatggacctctaggagagactgtcttg
gaatgttataactgtggatgtcgtaatgtgtttctccttggctttattccagctaaggca
gactccgtggtcgttctgctgtgcaggcagccatgtgccagtcagagcagtttaaaggat
attaattgggacagttcacaatggcagcctcttatccaagatcgctgtttcctttcgtgg
ctggtaaagattccatctgagcaggaacagttgagagcacgtcagattacagctcaacag
atcaacaaactggaagaactctggaaggaaaatccgtctgcaactcttgaggatttagaa
aagcctggtgttgatgaagaaccgcagcatgtcctgctgagatatgaagatgcttatcaa
taccagaatatatttggccctctggtcaagcttgaggcagactacgacaagaaactcaag
gagtctcagacccaagacaacatcacagtcagatgggacctgggcttgaacaagaaaaga
attgcttatttcactttgccaaagaccgattcagatatgcgtcttatgcaaggagatgag
atctgcttgaggtacaaaggagacctggcccctttatggaaaggaattggtcatgttatc
aaagttcctgataattatggtgatgagatagccatcgagctgaggagcagcgttggagcg
cctgtggaagttactcataacttccaagtggattttgtgtggaagtctacttcatttgac
aggatgcagagtgctttaaaaacattcgctgtggatgagacttcggtgtctgggtacatc
tatcacaaactgttaggtcatgaggtagaagatgtaattattaaatgccagttgccaaag
cgctttacagcgcaaggacttcctgatctcaaccattctcaggtttatgctgtgaagact
gtcctgcagcgtcctctgagccttatccagggtccccctggtaccggaaaaacagtgaca
tcagccacaatcgtctatcatctggccagacagggcaacgggcctgtgttagtctgtgct
cccagtaatatagctgtagatcagttgactgagaagatccatcaaactggactgaaagtg
gttcgtctgtgcgctaaaagtcgtgaagcaattgactctcctgtgtccttcttggcattg
cacaaccagatcagaaacatggatagcatgccagagcttcagaaactgcagcagcttaaa
gatgaaactggagaactgtcatctgccgatgagaaacgttaccgtgcactgaaacgcaca
gcagagcgggaattgcttatgaacgcagatgtgatctgctgcacctgtgtgggagctggt
gatccaagacttgcaaaaatgcagttccgttccattctgatcgatgaaagcacacaggct
actgagccagagtgcatggtgccggttgtgctgggagcaaaacagcttattcttgtgggt
gaccactgccagctggggcctgttgtgatgtgtaaaaaggctgccaaggctggtctgtct
cagtccctcttcgagaggctggtggtgctgggcatccgtcccatccgcctgcaggtgcag
tatcgcatgcaccccgcactcagcgccttcccatccaacatcttctacgaggggtcgctc
cagaacggcgtcaccgcagcggatcgtgtgaaaaaagggtttgatttccagtggccgcag
ccagataagccgatgtttttctacgttacacaaggacaggaggaaattgccagctcaggc
acttcttacttgaacaggacggaagcggccaatgtggagaagataacgacaaagctattg
aaagctggtgccaaaccggatcagatcggcattattactccttatgaaggtcaacgatcc
tatctggtccagtacatgcaattcagcggttccctgcatacaaagctctaccaggaagtg
gaaattgcaagtgtggatgccttccagggacgggagaaggactttattatcctttcttgt
gtgagggccaacgaacaccaaggaatagggtttctgaatgaccccaggcgtcttaatgta
gctcttacaagagcaaggtacggagtaattattgttgggaacccgaaagcgctgtctaaa
caaccgctttggaatcacctcctgaattactacaaggagcagaaggttctggtggaggga
ccactgaataacctccgggaaagccttatgcagttcagcaaaccccgcaaacttgtcaat
accatcaacccgggtgcccgtttcatgactactgccatgtacgatgcgcgtgaggctatt
attccaggatctgtctacgaccggagcagtcaagggcgcccgtccaacatgtacttccag
acccacgaccagatcgggatgatcagtgccggccccagccacgtcaccgccatgaacatt
cctatccctttcaacctcgtgatgccaccgatgccaccaccgggatactttggccaggct
aacggaccagccgcaggacgtggggcgcccaaaggcaagactggtcgtggtgggcgccag
aaaaaccgttttgggattcctggaactagtcagtcgaaccttccgaacagccaagcgagc
caagacgtggtgtcccagcccttctcccagggcccactgacccaggggtatatctccatg
agtcagccgtcgcagatgagtcagcctgggctctcccagccagaactatcccaggacagt
taccttggtgatgagtttaaatctcagattgacgtggcgctgtcacaggactctacttac
cagggtgaacgtgcatatcaacatggtggagtgacgggactgtcacagtattag
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