Numenius arquata (Eurasian curlew): 141475880
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Entry
141475880 CDS
T11436
Symbol
SMG5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5 isoform X1
KO
K11125
protein SMG5
Organism
narq Numenius arquata (Eurasian curlew)
Pathway
narq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
narq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141475880 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
narq03019
]
141475880 (SMG5)
03032 DNA replication proteins [BR:
narq03032
]
141475880 (SMG5)
Messenger RNA biogenesis [BR:
narq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
141475880 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
141475880 (SMG5)
DNA replication proteins [BR:
narq03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
141475880 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
141475880
NCBI-ProteinID:
XP_074020527
LinkDB
All DBs
Position
27:complement(2080460..2109697)
Genome browser
AA seq
1049 aa
AA seq
DB search
MSQGGGATGESGEPEAKVLHTKRLYRAVVEAVHRLDLILGNKAAYQEVFKPENISLRNKL
RELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGI
GFYQHLLLYIQSHYQLELQSCIDWTHVTDPLIGCKKPVSASEKEMEWAQMACHRCLVYLG
DLARYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEATYCYLRCI
QSEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPSKKRGKDIKRLLVSFMYLQSLLQ
PKSSSLDSELTSLCQSVLEDFNLCLFYLPSPPNLSSTSEDEEEYESGYSFLPDLLIFRMV
IICLMSVHSLKRAGSKQYSAAIAFTLALFSHLINHVNIRLQAELEEGENPVPAFQSDGTD
DQEPREPLNSIEKEAEADLANHQPSEEQRKNDCKKSKKYSRLSCLRRRRHPQKVDESDLS
EGFDSDSSQGSIKGSDGSESGSEKSDEEAEAAFDVETDSDMNSQESRSDLEDMEDEPGEE
GSGRGKSGPKEALKNCVDGNGLGDSKSPNSSKTEAPDPAVNGPASLSTNDASIASNLQAM
STQLFQTKRCFRLAPTFSNILLKPNSDPPVLKDGLENKPCVNGDLEKPGLADQDDVSDSE
ESISSNKSCRNERSLQEKLEIVTNEGLLLTVKVFLDWLRTNTDLIIMCAQSSQSLWNRLS
VLLNLLPSAADLQESGLALCNEVKDILSGAELPDLKANLLLPEDVALRNLPPLKNAHRRF
NFEQDRPIFSAVEESVVRICCIRSFGHFITHLQGSILQFNSELGIFISIAQAEQDNLLHQ
AQAQFHMAAEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPYLVPDTQALCQH
LAVIKQLATSGRFIIIIPRTVIDGLDFLKKENAGARDSIRYLEAEFKKGNRYIRCQKDVG
RSFERHKLKRQDLDAWNLYKILDSCKQLTVSQGSGEDDTTGMVTIITGFQLEDPSVFSAP
MQSAIQAAANASVEIKNVLEFYKQWKEMG
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgagccagggcggcggggctaccggcgagagcggcgagccggaggccaaggtgctgcac
accaagcggctgtaccgagcagtggtagaggccgtccatcgtttggatctcatccttggt
aataaggcagcgtatcaggaagtgttcaagccagagaacatcagcttgaggaacaagctg
cgggagctgtgtgtgaagctgatgttcttgcatccagtggattatggaagaaaagcagaa
gagctgctctggaggaaagtttactatgaagttatccagctcattaaaacaaataaaaag
cacattcacagccggagcactctggagtgcgcctaccggactcacttagttgctggcata
gggttttaccagcaccttctgctctacatccagtcccactaccagctggagctgcagagc
tgcatcgactggacacacgtaacggaccctctcataggctgcaagaaacctgtgtctgcc
tcggagaaggagatggagtgggcacagatggcgtgtcacagatgtctggtgtatctggga
gatctcgctcgctatcagaacgagctggcaggtgtggacacggagctgctggctgagcgg
ttttactatcaagccctttctgttgccccacaaattgggatgccctttaaccagctgggg
acgttggcagggagcaagtactacaacgtggaagccacctactgctacttgcgctgtatc
cagtctgaagtgtccttcgaaggtgcctacgggaacctgaagcggctgtacgacaaagca
gccaaaatgtatcaccagctgaagaaatgcgagaccaggaagttgtctccgagcaagaaa
cgaggcaaagacattaagaggttgctggtgagcttcatgtacctgcagagtcttttgcag
ccaaagagcagttctctggactctgagctgacatctctctgccagtctgtactggaggat
ttcaacctgtgcttgttctacctgccctctcctcctaacctgagctcgactagtgaagat
gaagaagagtatgagagtggctactccttccttcctgatctcctcatctttcgcatggtg
atcatctgccttatgagtgttcacagcctcaagagggcaggttcaaagcagtacagcgca
gctattgccttcacgctcgccctcttctctcacctgataaatcacgtcaatattcgcctc
caggcagagctggaggaaggggagaatccagtcccagcctttcagagcgatggcacagat
gaccaggagccgcgggagcccttgaactcgatcgagaaggaagctgaagctgacttggcc
aaccatcagcccagtgaggaacaacggaagaacgactgcaagaaaagcaagaaatactcc
cgcctttcctgtttgcgtcgccgccgccacccccagaaggtggatgagagtgacctgagt
gagggctttgactctgactccagccagggctccataaagggcagcgatggctcagaaagt
ggctcagagaagagtgatgaggaagcagaagctgcttttgatgtggagacggactctgac
atgaacagccaagaatctcggtctgatttggaggacatggaggatgagccgggtgaggag
gggagcggccgaggcaaaagtgggcccaaagaggccttaaaaaactgtgtggatggcaac
gggcttggggactccaagagcccaaacagctctaaaactgaggctccggatcccgcggtc
aatggcccagcttccctgagcactaatgacgccagcatcgccagtaatctccaggccatg
tccacccagctgttccagaccaaacgctgcttccgcttggctcccactttcagcaacatc
cttctcaaaccaaacagtgacccacccgtcttgaaggatggactagaaaacaagccatgt
gtcaatggagatctggagaagcctggcttggcagatcaggatgatgtgtctgactccgag
gaaagcatttcaagtaacaaatcctgcaggaatgagcgatcccttcaagagaagctggag
atcgtgaccaacgaagggctgctgctcactgtcaaggtgttcctggactggctgaggaca
aatacggacctcatcatcatgtgtgctcagagctctcagagcctgtggaacaggctgtct
gtgctcctgaaccttctgccttctgctgcggacctgcaggaatcagggctggccctctgt
aacgaagtcaaggatattctgagcggtgctgagctcccagacctgaaggccaacttgctg
ctcccggaagatgtggccctgcgaaatcttccccctctgaaaaacgcacacaggaggttt
aacttcgagcaggaccggcccattttctcagcagtggaggagtctgtggttcggatttgc
tgcattcggagctttggccacttcattacccacttgcaaggcagcatcctgcagttcaac
tcggagctcgggatcttcatcagcatagcccaggcagagcaggacaaccttctgcaccag
gcccaggcccagtttcacatggctgcggaggaagctcgtcggaacaggctcatgagagat
atggctcagcttcgactgcagctggaggtttctcagctggagggaagtctccagcagccc
aaagcgcagtcagccatgtctccttaccttgtccctgatacccaggccctctgccagcac
ctggctgtcatcaagcagctggccaccagcgggaggttcataatcatcatccctcgaaca
gtgatcgatggcttagacttcctgaaaaaggagaacgcaggtgctcgggacagcatccgg
tatctggaggcagaatttaaaaagggaaacaggtacatccgttgccagaaagatgtcggg
aggagctttgagaggcataaattgaagaggcaagatttagatgcctggaatctctataaa
atactggacagttgcaaacagctgacggtgtcccaggggagcggagaggacgacaccacc
ggaatggtcaccatcatcacaggcttccagctggaggacccaagcgtgttctcagcgccc
atgcagtctgccatccaggcagccgccaacgccagcgtagaaatcaaaaacgttctggag
ttctacaagcagtggaaagagatgggctga
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integrated database retrieval system
