Numenius arquata (Eurasian curlew): 141479060
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Entry
141479060 CDS
T11436
Symbol
PDZRN4
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
narq Numenius arquata (Eurasian curlew)
Brite
KEGG Orthology (KO) [BR:
narq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
narq04121
]
141479060 (PDZRN4)
Enzymes [BR:
narq01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
141479060 (PDZRN4)
Ubiquitin system [BR:
narq04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
141479060 (PDZRN4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
zf-RING_2
zf-C3HC4_4
zf-RING_5
zf-C3HC4_3
zf-rbx1
PDZ_Tricorn
TRAF3_RING
Prok-RING_4
Sina_ZnF
IBR_1
Motif
Other DBs
NCBI-GeneID:
141479060
NCBI-ProteinID:
XP_074024156
LinkDB
All DBs
Position
2:complement(100498406..100748094)
Genome browser
AA seq
1035 aa
AA seq
DB search
MGFDPSRFAAPVAAELQCKLCGRVLEEPLSTPCGHVFCAGCLLPWAARRRRCPLRCRPLA
AAELRPVLPLRSLVQKLEVKCDYSPRGCGRTVRLRELPAHLAACRYGPAAAGSAEPEPGG
GRTPGRSGGGSAGRPRAEWGQRCLRALRGGGGGPEPGAGLKREALRWSRREKSLLAQLSA
LQSEVQLTARRYQAKFGQYMSHISSITRDLAGSQPGKGGEPKPLKIMLHRENDTLGFNII
GGRPNQNNQEESAEGIYVSKILENGPADKAEGLQIHDKIIEVNGKDLSKATHEEAVEAFR
NAKEPIVVQVLRRAPISKAHGSSQDIRLVDASTQTDITFEHIMALAKLRPSTPPVPDICP
FLLSDSCHSLHPVEHEFYEGNEYLSSLPADADRAEDFEYEEVELCRVSSQEKLGLTVCYR
TDDEEDTGIYVSEVDPNSIAARDGRIREGDRILQINGQDVQNREEAVALLSSEECKKIVL
LVARPEMQLEEGWLDDERNEFLEELNLEMLEEQHNEAMQYTANEVEQPKKHEEEDGTTDT
ATSSSNNHEKDSGVGPTDESLRNDESSEQENAPEEQNSATLQSKRELGHSQDTLGSVELQ
CNESFVSGECIESDFIGNPEEECERFRQLLELKCKIRNHGEYDLYYSSSTIECNRREQDG
VEHELQLLNEELRNIELECQNIMQAHRLQKVRDQYGDIWTLHDEGFRNYNTSIDVQRGKL
DDIMEHPEKSDKDSSSAYNTAESCRSTPLTVERSPDNSLQRMISITNRKNLRSTIVANQS
SSGQSNRETTSAKTKPTEQNSAAEDAALASESGKFADQEKQSSEHIPYLSPYHSSSYRYG
NIPAHAKHYQSYMQLIQQKSAVEYAQSQLSLVSMCKDTQKCAEPKMEWKVKIRSDGTRYI
TKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQRRRRE
FMMRSRLECLKESPQSGSEGKKEINIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKSP
DGTRVHNAFLSVTTV
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgacccgtcgcgcttcgcggcgccggtggcggcggagctgcagtgcaagctg
tgcgggcgggtgctggaggagccgctgtccacgccgtgcgggcacgtcttctgcgccggc
tgcctgctgccctgggcggcgcggcggcggcgctgcccgctgcgctgccggccgctggcg
gccgccgagctgcggcccgtcctgcccctccgcagcctggtccagaagctggaggtcaag
tgcgactacagcccgcggggctgcggccgcaccgtgcggctgcgggagctgcccgcccac
ctcgcggcgtgccgctacgggccggcggccgccggcagcgccgagccggagccggggggc
gggcggacccccgggcgctcggggggcggctccgccgggcggccgcgggcggagtggggt
cagcgctgcctgcgggcgctgcggggcggcggcggcggcccggagcccggtgcggggctg
aagagggaggccctgcgctggagcaggagggagaagtcgctgctggcgcagctctcggcg
ctgcagagcgaggtgcagctgacggcgcggcggtaccaggcgaagttcgggcagtacatg
agccacatcagcagcatcacccgggacctggcgggcagccagcccggcaagggaggagaa
cccaaaccattaaagatcatgctacaccgagaaaatgatactttgggattcaatattata
ggaggacgacccaatcagaacaatcaggaggaatctgctgagggaatttatgtgtcaaag
attttggaaaatggacctgcagacaaagcagaaggcctgcaaattcatgacaagattatt
gaggtcaatgggaaggacctctccaaggctactcacgaagaggcagtggaagcttttcgc
aatgccaaggagccaattgtggttcaggttttacgacgagccccaattagcaaagctcat
ggtagctctcaggatattcggcttgtggatgctagcactcagactgacatcactttcgag
catattatggctctggccaaactaaggccttccacaccaccagttcctgatatctgccct
tttctactttcagacagctgccattctcttcacccagtggagcatgaattttatgaaggt
aatgagtatctttccagcctgcctgctgatgcagatagagcagaggactttgagtatgag
gaggtggaactgtgccgtgttagcagccaggagaagttggggctgactgtttgttacaga
accgatgatgaggaggacacggggatctatgtcagtgaggttgatccgaacagcattgct
gccagagatggccggatccgggaaggagatcgcattttgcaaataaatggccaagatgtc
cagaatcgggaagaggcagtggcgttgctctccagcgaagaatgcaagaaaattgtgttg
ctggtcgcaagaccagagatgcagctggaagaagggtggctggatgatgaaaggaatgaa
ttcttagaggagttaaacttggaaatgttggaagagcagcacaatgaagcgatgcagtac
acagccaacgaggtggagcagccaaagaaacatgaagaggaggatggcactacagacact
gcaacctcatcatccaacaatcatgagaaagacagtggcgtgggacctacagatgaaagt
ctgcgtaatgacgagagctcagaacaagaaaatgcacctgaggagcagaacagtgcaaca
ctgcagagcaaacgggagctgggccacagccaagatacattaggaagtgttgagctccag
tgcaatgaaagctttgtgtccggggaatgcattgagtctgatttcataggaaacccagag
gaggaatgtgaaaggtttcgacagctgttggaactgaagtgcaagattcgaaaccatggg
gagtacgacctgtattactcgagcagcacaatagagtgcaacagaagagagcaagatgga
gtggagcatgagctgcagctacttaatgaggaactgaggaacattgaacttgaatgtcag
aatattatgcaagctcaccggctccaaaaggtgagggatcagtatggagacatttggact
ttacatgacgaggggttcaggaattacaacaccagcatagatgtacaaagaggcaaactg
gatgacatcatggagcaccctgagaagtctgacaaggacagctccagcgcatacaacacg
gccgaaagttgcaggagcactccgctgactgtggagagatcccccgataactctctccag
aggatgatcagcataaccaataggaaaaacctgaggagcacaattgtggctaatcagtca
tcctcaggacaaagcaacagggagacaacctcagccaaaaccaaacccactgagcaaaac
agtgctgctgaggatgcagcgctggcatcagaaagcggcaaattcgcagaccaggaaaag
cagagcagcgagcacattccctacctgtctccatatcacagctcttcttacaggtatggg
aatatacctgctcatgcaaagcattatcaaagttatatgcaactgatccagcagaagtct
gctgtggagtatgcccaaagccagctcagcctggtaagcatgtgcaaagacacacagaag
tgtgcagagcccaagatggaatggaaagtgaaaataaggagtgatgggacgaggtacatc
acaaagagaccagttcgagacagaattctgaaggaacgtgccttaaaaattaaagaggag
cgcagtggaatgacgacagatgatgacacaatgagtgagatgaagatgggtcgctactgg
agcaaagaagagcggaagcagcatttggtgcgagctaaggagcagaggagacggcgggag
ttcatgatgaggagcaggctggagtgtcttaaggaaagtccacagagtggcagcgagggc
aaaaaggaaattaacattattgaactgagtcacaaaaagatgatgaaaaagagaaacaag
aaaatcttggacaactggatgacaatccaagaactgatgacacatggtgctaagtctcca
gatggcacaagagtgcacaatgcctttttatcagttactactgtatga
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integrated database retrieval system
