Numenius arquata (Eurasian curlew): 141479503
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Entry
141479503 CDS
T11436
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
narq Numenius arquata (Eurasian curlew)
Pathway
narq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
narq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141479503 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
narq03019
]
141479503 (PNLDC1)
Enzymes [BR:
narq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
141479503 (PNLDC1)
Messenger RNA biogenesis [BR:
narq03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
141479503 (PNLDC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
141479503
NCBI-ProteinID:
XP_074024813
LinkDB
All DBs
Position
2:15788458..15800074
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AA seq
531 aa
AA seq
DB search
MEVGAADFERCLPSLRDRVRCAAFLALDMEFTGLHLTSPVNNEPSLFDSPTERYLKARQS
VQRFTVAQLGLAIFSNENSNKYVVHSYNFFLFPSTLGLSDVEFALSASSIQFLSHYGFDY
NKFLKDGIPYMNEVQEKILSQRLLAGSSKVSSALDRDVLKKAIDEVTCWIAAAEEEETMI
LQDLSGYQIFEVQLVLREALQNVWTQPLGDKKVMVKKVSPQHRQLLENSPNDCCRKELIL
LSARGFTNLFQTLVKAKKPLVGHNMLMDLMHLHDKFYKPLPESYEEFKRNIHNLFPVLID
TKTVTKSVWKKCSFPRVSNLLEVYEVLCNNLNPKDSACPVIALASDCSRYAEKKSPHEAG
YDAFLCGSVLLKSAHLLLCRSTNDAVEADPSFSQYLTVLAKYLNKVNLIRGGVSSINFSG
EDSPCEHPPALIVHVRGWPGLNERQIYEEFKPLCRFDVRRLSRNQFILLSNKFDDVRLVL
RDYKHHPHLRVSVRRHWRHSPRVNCLLQVSGIVALWSLLAFVLGGAPCGSW
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgggggcggcggacttcgagcggtgcctgccgagcctgcgggaccgcgtccgc
tgcgccgccttcctggcccttgatatggagtttacaggcttacacttgacttccccagta
aataacgagcccagcctgttcgattccccgacggagcggtacctgaaggccaggcagagc
gtccagcgcttcactgttgcgcagctcgggctggcgatattctcaaacgaaaattcaaac
aagtatgtggtgcattcatacaacttttttctctttccctcaacgttgggactttcggat
gttgaattcgccctctctgcatctagcattcagttcctatctcattatggctttgactat
aataagtttctcaaagatggaatcccatacatgaatgaggtacaggagaagatccttagc
cagcgtctcttagcgggaagctcgaaagtcagcagtgccctggacagggatgtgctgaag
aaggctattgatgaagtgacctgttggatagctgcagcagaggaagaggagactatgatt
ctgcaggatctgagtggctatcagatttttgaagttcagttggttctgagggaggctctc
caaaatgtttggacacagcctcttggagacaagaaggtaatggtgaaaaaagtgagtcca
caacatcgtcagcttctggagaactctcctaatgactgctgccggaaggagctcattctc
ctgtctgcccggggcttcaccaacctcttccagacactggttaaagccaagaagcccctg
gtaggacacaacatgcttatggaccttatgcatcttcacgacaagttctacaagcccctt
ccagaaagctatgaggagtttaaaaggaacattcacaacctgtttcctgtcctcatagac
accaagactgtaacaaaatctgtctggaagaaatgttcgtttcctcgagtatctaatctt
ttggaggtgtatgaggttttgtgcaacaacctaaatcccaaagattcagcatgccccgtg
atagctcttgcgagtgactgctcaagatatgctgagaagaaatctcctcacgaggcaggc
tatgatgcatttctctgtggttcagttcttctgaaatcagctcatttgttactgtgcaga
tccacaaatgatgcagtggaggctgatccttctttctctcagtatctcactgtgttagcc
aagtacctgaacaaagtgaatctcatccgaggtggtgtttcaagcattaatttttctggg
gaagacagtccgtgcgaacatcctcctgccttgattgtccatgtccgaggctggccaggg
ctgaatgaaaggcagatttacgaagagtttaaacctctttgtcgctttgatgtcagacgg
ctttcaaggaaccagttcattctgctctctaacaaatttgacgatgtcaggctggtcctg
cgagattataaacatcaccctcatctgcgggtttctgtccgtcgccactggaggcactct
ccacgagtgaactgcctgctgcaagtctctggtattgtggcactgtggtctctcttagcc
tttgtgctcggaggagctccttgcggttcatggtaa
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