Natronorubrum aibiense: GCU68_00050
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Entry
GCU68_00050 CDS
T06256
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nas
Natronorubrum aibiense
Brite
KEGG Orthology (KO) [BR:
nas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nas03016
]
GCU68_00050
Enzymes [BR:
nas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GCU68_00050
Transfer RNA biogenesis [BR:
nas03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GCU68_00050
Prokaryotic type
tRNA splicing ligases
GCU68_00050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QFU81061
UniProt:
A0A5P9NYS1
LinkDB
All DBs
Position
8324..9790
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AA seq
488 aa
AA seq
DB search
MSDSTFDADGITLEKVREYVWEIPQEGEMNTPARVLASEVLLEEIKEDKTLQQLKNTTHL
PGITKHAICMPDGHQGYGFPVGGVGALDAENGCISPGAVGYDINCGVRMMKTNLTYDDLK
GRETELVDSLFANVPSGLGGGGIVESGIDTVDEILARGVDWALENGYAVEDDLRHCEDEG
HRAEADSSKISQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFHDEVGSAYGLEEDQIVVLI
HCGSRGLGHQTCNDYLRKIEKQHQGLLNTLPDKELAAAPAGSQLAEDYYGAMNAAINFAW
VNRQLIMHRTREVFERVFDRSWEDMEMDLLYDVAHNIAKKEVHDVDGEERELYVHRKGAT
RAFPAGHPEVPKAYRDVGQPVIIPGSMGTGSYVLRGGENSMELTFGSTAHGAGRLMSRTQ
AKSEYWGGDVQQELEEQDQIYVKAQSGATVAEEAPGVYKDVDEVVRISDELGIGDKVART
FPVCNIKG
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgagcgattctacgttcgacgccgacggcatcacgctcgagaaggtgcgtgagtacgtc
tgggaaatcccacaggaaggcgagatgaacacgccggcacgggtactggcgagcgaggtg
ctgctcgaggagatcaaagaggacaagacgctccagcaactcaagaacacgacccacctg
ccggggatcacgaaacacgcgatctgtatgcccgacgggcatcagggctacggctttccg
gttggcggcgtcggcgcactcgacgccgagaacggctgtatttcgccgggcgcggtcggg
tacgacatcaactgtggggtccgaatgatgaagacgaacctcacctacgacgacctcaaa
ggccgcgagacggaactcgtcgactcgctgttcgcgaacgtcccctcggggcttggcgga
ggcggcatcgtcgaatccggcatcgacaccgtcgacgaaatcttagcgcggggcgtcgac
tgggcactcgagaacggctacgccgtcgaagacgacctgcgtcactgtgaggacgagggc
caccgggctgaggccgactcgtcgaaaatcagccagaaagccaaggaccgggggaaaaac
cagatcggctcgctggggtcggggaaccacttcctcgaggttcagcgcgtgaccgacgtc
ttccacgacgaggtggggtcggcctacggcctcgaggaagaccagatcgtcgtcctgatc
cactgcggctcgcgggggctgggccatcagacgtgtaacgactaccttcgaaagatcgaa
aaacagcatcagggcctgctaaacacgctcccggataaggaactcgcggccgcgccagcg
ggctcacagctcgccgaagactactacggcgcgatgaacgcggcgatcaacttcgcgtgg
gtcaaccgccagctgatcatgcaccgcacgcgagaagtcttcgaacgagtcttcgaccgc
tcgtgggaggacatggagatggacctgctgtacgacgtggcccacaacatcgcgaaaaaa
gaggtccacgacgttgatggggaagaacgagaactctacgtccaccgcaaaggagcgaca
cgggcgttcccggccggccacccagaggtgccaaaggcctaccgcgacgtcggccagccg
gtgatcattcccggcagcatgggcaccggcagctacgtcctccgtggtggcgagaactcg
atggagttgacgtttggctcgaccgcacacggcgcggggcggctgatgagccgcacccag
gccaaaagcgagtactggggcggcgacgtccaacaggaactcgaggaacaggaccagatc
tacgtcaaggctcagtccggcgcgacggtcgctgaggaagcacccggcgtctacaaggac
gtcgacgaagtcgttcggatctcggacgaactcggcatcggcgataaagtcgcacggacg
ttccccgtctgcaacatcaaaggctaa
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