Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112392487
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Entry
112392487 CDS
T08872
Symbol
SMARCA2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi03082
ATP-dependent chromatin remodeling
nasi04714
Thermogenesis
nasi05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112392487 (SMARCA2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
112392487 (SMARCA2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
112392487 (SMARCA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nasi03021
]
112392487 (SMARCA2)
03036 Chromosome and associated proteins [BR:
nasi03036
]
112392487 (SMARCA2)
Transcription machinery [BR:
nasi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112392487 (SMARCA2)
Chromosome and associated proteins [BR:
nasi03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
112392487 (SMARCA2)
Chromatin remodeling factors
BAF complex
112392487 (SMARCA2)
PBAF complex
112392487 (SMARCA2)
GBAF(ncBAF) complex
112392487 (SMARCA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
112392487
NCBI-ProteinID:
XP_024589978
UniProt:
A0A341AK89
LinkDB
All DBs
Position
Unknown
AA seq
1257 aa
AA seq
DB search
MYISTFPLPHFIISVRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLR
QEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLN
SILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEG
YRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRKKRKKAEENAEGE
ESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRS
DSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQY
SARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGL
GKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRS
LVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVA
PRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETIL
IIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSE
KDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFE
LLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFN
EPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR
LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEV
PDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVER
LTCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVD
KDPAKEDMEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDRCNVEKVPSNSQLE
IEGNSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVML
LCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEDEEEEDESESEAK
SVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEEPDGNEQSEASGTDDE
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atgtatatttccaccttccccctcccccattttattatctccgttagacttcaggctcgc
atagcccataggatacaggaactggaaaatctccctggctctttgccaccagatttacga
accaaagcaaccgtggaactgaaagcacttcggttactcaatttccagcgtcagctgaga
caggaggtagtggcctgcatgcgacgggacacgaccctggagacggccctcaactccaaa
gcatacaaacggagcaagcgccagaccctgagggaagcccgcatgacggagaagctggag
aagcagcagaagatcgagcaggagaggaagcgtcggcagaagcaccaggaatacctgaac
agtattttgcagcatgcaaaagattttaaggagtaccatcggtctgtggccgggaagatc
cagaagctttccaaagcagtggccacttggcacgccaacactgaaagggagcagaagaag
gagacggagcggatcgaaaaggagagaatgcggagattgatggctgaagatgaagagggc
tacagaaaactgatcgatcaaaagaaagataggcgtttagcgtaccttttgcagcagacg
gatgagtatgtagccaacctgactaatctggtttgggagcacaagcaagcccaggcggcc
aaagagaagaagaagaggaggaagaagaggaagaaggctgaagagaatgcagagggggag
gagtctgccctgggaccagatggagagcccatagatgagagcagccagatgagtgacctc
cctgtcaaagtgactcacacagaaaccggcaaggtcctgtttggcccagaagcacccaaa
gcaagtcagctggatgcctggttggaaatgaatcctggttacgaagttgccccgagatcg
gacagtgaagagagcgattctgattatgaggaggaggatgaagaggaagagtccagtagg
caggaaactgaagagaaaatacttctggatccaaacagcgaagaggtttccgagaaggac
gctaagcagatcatcgagacagctaagcaagacgtggacgatgagtacagcatgcagtac
agtgccaggggttcccagtcctactacacggtggcccacgccatctcggagagggtggag
aagcagtcggccctcctcatcaatgggaccctgaagcattatcagctccagggcctggaa
tggatggtttctctgtataataacaatttgaacggaatcttagctgatgaaatggggctg
ggaaagaccatacagaccattgcactcatcacttatctgatggagcacaaaagactcaat
ggcccctatctcatcattgttcccctttcgactctgtctaactggacgtatgaatttgac
aaatgggctccttccgtggtgaaaatttcttacaagggcacccctgccatgcgtcgctcc
cttgtgccccagttacggagtggcaaattcaatgtcctcctgactacttatgagtacatt
ataaaagacaagcacattcttgcaaagattcggtggaaatatatgatagtggacgaaggc
caccgaatgaagaatcaccactgcaagctgactcaggtcctgaacactcactacgtggcc
cccagaaggatcctcttgaccgggacccccctgcagaataagctcccggaactctgggcc
ctcctcaacttcctccttcccacgatttttaagagctgcagcacgtttgagcagtggttt
aatgccccgtttgccatgactggagaaagggtggacttaaatgaagaagaaactatactg
atcatcaggcgtctgcataaggtgttgagaccatttttactgaggagactgaagaaagaa
gttgaatcccagcttccagaaaaagttgaatacgtgatcaagtgtgacatgtcagctctg
cagaagattctgtatcgccatatgcaagccaaagggatcctcctcacagacggttcggag
aaagataagaaggggaaaggaggcgctaagacacttatgaacactatcatgcagttgaga
aaaatctgcaatcacccctatatgtttcagcacattgaggaatcctttgctgaacacctg
ggctattcaaatggggtcatcaatggggctgagctgtatcgggcctcaggaaagtttgag
ctactcgatcgtattctgccaaaattgagagcgaccaatcaccgcgtgctgcttttctgc
cagatgacgtctctcatgaccatcatggaggattactttgcttttcggaacttcctttac
ctgcgcctcgatggcaccaccaagtctgaagatcgtgctgctttgctgaagaaattcaac
gaacctgggtcccagtatttcattttcttgctgagcacaagagctggaggcctgggctta
aatctccaggcagctgataccgtggtcatctttgacagcgactggaatcctcatcaggac
ctgcaagcacaagaccgcgctcaccgcatcggccagcagaacgaggtccgcgtgctgaga
ctctgcaccgtgaacagtgtggaggaaaagatcctcgcagccgccaagtacaagctgaat
gtggatcagaaggtgatccaggcaggcatgtttgatcagaagtcttcaagccacgagcgg
agggcattcctgcaagccatactggagcacgaagaggaaaatgaggaagaagatgaagta
cccgacgacgagactctgaaccaaatgatcgctcgacgagaggaggaatttgatcttttt
atgcgcatggacatggaccggcggagggaggatgcccggaacccaaaacgcaagccccgc
ctgatggaggaagatgagctgccctcctggattattaaagatgacgccgaggtggaacgg
ctgacgtgtgaagaagaggaggagaagatattcgggagggggtctcgccagcgccgggac
gtggactacagcgacgccctcacagagaagcagtggctgagggccattgaagacggcaat
ttggaagaaatggaagaggaagtacggcttaagaagcgaaaaagacgaagaaatgtggat
aaagatcctgcaaaagaagatatggaaaaggccaagaagaggagaggtcgccctccggct
gagaaactgtcaccaaatccccctaaactgacaaagcagatgaacgctatcatcgatact
gtgataaactacaaagacaggtgtaacgtggagaaggtgcccagtaattctcagttggaa
atagaaggaaacagttcagggcgacagctcagtgaagtcttcattcagttaccttcaaga
aaagaattaccagaatactatgaattaattaggaaaccggtggatttcaaaaaaataaag
gaaagaatccgtaatcataagtaccgaagcctgggtgacctggagaaagacgtcatgctg
ctctgtcacaatgctcagacgttcaacttggagggatcccagatctacgaagactccatc
gtcttacagtcggtgttcaagagtgctcggcagaaaattgccaaagaagaagagagtgag
gacgagagcaacgaagaggaggacgaggaagaggaagacgagtcagagtcagaggcaaaa
tccgttaaggtgaaaatcaagctcaataagaaagatgacaaaggccgggacaaaggaaaa
ggcaagaaaaggccaaatcgaggaaaagccaaacctgtggtgagcgattttgacagcgat
gaagagccggatggaaatgaacagtcagaagctagtggcactgatgatgagtga
DBGET
integrated database retrieval system
