KEGG   Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112393927
Entry
112393927         CDS       T08872                                 
Symbol
TDP1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
nasi  Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:nasi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    112393927 (TDP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nasi03400]
    112393927 (TDP1)
DNA repair and recombination proteins [BR:nasi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     112393927 (TDP1)
SSDB
Motif
Pfam: Tyr-DNA_phospho RMMBL
Other DBs
NCBI-GeneID: 112393927
NCBI-ProteinID: XP_024592125
UniProt: A0A341AND4
LinkDB
Position
Unknown
AA seq 603 aa
MSQEGNYGRWTISSSDESEEEKPRTDEPSTSFLPHAEQGAASEPKYTCSEARKAAHRRKI
APVKFSNTDSVSEASPPKRQKGGSQEDLGWCLSSSEDELPPETQQKQAKDTGVKEEKGLP
SPRDGAVPGAGHHSLSAGHGLETSGEGQDIWDTLGKGNPFQFYLTRVSGIKPKYNSGALH
IRDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKP
YENIALCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGMWLSPLYPR
IVHGTHRSGESTTHFKADLISYLMAYNTSPLKEWIDTIQEHDLSETNVYLIGSTPGRFQG
NQKDNWGHFRLRKILKEHALSIPKAESWPIVGQFSSVGSMGADESKWLCSEFKESLVTLG
KESRALGSAVPLHLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSADTS
GRSNAMPHIKTYMRPSPDFSQLAWFLVTSANLSKAAWGALEKNGAQLMIRSYELGVLFLP
SAFGLDSFGVKQKFFSGSQEPTASFPVPYDLPPELYGSKDRPWIWNIPYVKAPDTHGNMW
VPS
NT seq 1812 nt   +upstreamnt  +downstreamnt
atgtctcaggaaggcaattatgggaggtggacgatatccagtagtgatgaaagtgaggag
gaaaagccaagaacggacgagccatctacctcttttctcccgcacgctgagcagggagca
gccagtgagccaaagtacacctgttccgaggctcggaaagctgcccacaggaggaagatc
gcacccgtgaaattcagcaacacagattccgtttcagaagcttcacctcccaaaaggcag
aagggcggttcccaggaagacctgggctggtgtctctccagcagtgaggatgagctgcca
ccagagacgcagcaaaagcaggctaaggacacgggggtcaaagaggagaaaggcctccct
tctcccagagatggtgctgtcccgggagctgggcatcacagcctgtcggccggccacggg
cttgaaacgtcaggggaaggccaggacatctgggacacgctgggtaaagggaaccccttc
caattttacctcactagagtctccggaattaagccgaagtataactcgggagccctccac
atcagggatattttatctcctctatttgggacacttgtttcttcagctcagtttaactac
tgctttgatgtggactggctcgtaaaacagtatccaccagagttcaggaagaaaccaatc
ctgctcgtgcatggcgacaaacgcgaagcaaaagctcacctacatgcccaggcaaagcct
tatgaaaacattgccctctgccaggcaaagttggatattgcatttggaacacaccacacg
aaaatgatgctactgctatacgaagaaggcctccgggttgtcatacacacctccaacctc
attcacgccgactggcaccagaaaacacaaggaatgtggttgagccccttgtacccacga
atagtccatgggacccacagatctggagaatcaaccacacactttaaagctgacctcatc
agctacttgatggcttataacacctctcccctcaaggagtggatcgataccatccaggag
cacgacctctcagaaacaaatgtttaccttattggctcaaccccgggacgctttcaagga
aatcagaaagataattggggacattttaggcttaggaagattctgaaagagcatgccttg
tccatacctaaagcagagtcctggcctatagtaggtcagttctcaagcgttggctccatg
ggggccgatgagtcaaaatggttgtgttctgagtttaaagagagcttggtgacactgggc
aaagaaagcagggccctaggaagtgctgttcctcttcatctgatctatccttcagtggaa
aacgtgcggaccagcttagaaggatatccagctgggggctctcttccctatagcatccag
acggcggagaaacagaattggctccattcctattttcacaaatggtcagctgacacgtca
ggccgcagcaatgccatgccacatattaagacatatatgagaccctctccagacttcagt
caacttgcgtggttccttgtcacaagcgccaatctgtccaaggccgcctggggagcgtta
gagaagaacggcgcccagctgatgatccgctcctatgagctcggcgtccttttcctccca
tcagcatttggcctggacagtttcggagtgaaacagaaattcttctcagggagccaggag
ccaacagcctcctttcctgtgccatatgacctgcctccagaactgtatggaagtaaagat
cggccctggatttggaacattccttatgtcaaagcaccagatacacacgggaacatgtgg
gttccctcctga

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