Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112394145
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Entry
112394145 CDS
T08872
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112394145 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nasi03041
]
112394145 (PRPF40B)
Spliceosome [BR:
nasi03041
]
Complex A
U1 snRNP components
U1 related factors
112394145 (PRPF40B)
Complex B
112394145 (PRPF40B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
DUF4936
RhoGAP-FF1
WW_2
DTW
Motif
Other DBs
NCBI-GeneID:
112394145
NCBI-ProteinID:
XP_024592511
UniProt:
A0A341APE1
LinkDB
All DBs
Position
Unknown
AA seq
865 aa
AA seq
DB search
MMPPPFMPPPGIPPPFPPMGLPPMSQRPPAIPPMPPGIMPPMLPPIGAPPPLTQIPGMVP
PMMPGMLMPAVPVTAATAPAAVAGTGPPRALWSEHVAPDGRIYYYNADDKQSVWEKPSVL
KSKAELLLSQCPWKEYKSDTGKPYYYNNQSKESRWTRPKDLDDLEALVKQEAAGKRQQPR
TLQPQPSQPQPDPPPVPPGPTLVPTGLLEPEPGGSEDCDVSEAAQPLEQGFLQQPEEGPS
SSAGQRQPPQQEEEESKPEPERSGLSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVV
TDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLKAKEAKQTLQHFLEQHERMTSTTRY
RRAEQTFGELEVWAVVPERDRKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSS
VNFQTTWSQAQQYLMDNPSFAQDHQLQNMDKEDALICFEEHIRALEREEEEERERARLRE
RRQQRKNREAFQTFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKF
YVEELKARFHDEKKIIKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNS
LLEKAEAREREREKEEARRLRRREAAFRSMLRQAVPAVELGTAWEEVRERFVCDSAFEQI
TLESERIRLFREFLQVLETECQHLHSKGRKHGRKGKKHHHKRSHSPSGSESEDEELPPPS
LRPPRRRRRNPSESGSEPSSSLDSVESGGAALGGRGSPSSRLLLGSDHGLRKVKKPKKRT
KKRRHKSNSPESETDPEEKAGKESDEKEPEQDKDRDLRRAELPNRSAGFGIKKEKTGWDT
SESELSEGELERRRRTLLQQLDDHQ
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgatgccaccacccttcatgcctcctccaggaatccccccaccttttcctccaatgggg
ctccccccgatgagtcagagaccaccggccatcccccccatgccacctggcatcatgccc
ccaatgcttccaccaataggggcgccaccaccactcacacagataccaggaatggtacca
cccatgatgccagggatgctgatgccagcggtgcccgtcaccgcagcgacggctccagct
gctgtggctgggacgggccctccgagggccctgtggagtgagcacgtggcccctgatggg
cgcatctactactacaatgctgacgacaagcagtccgtgtgggagaagcccagcgtgctc
aagtccaaggcagagctcctgctatcccagtgtccctggaaagagtacaagtcggacaca
ggcaaaccttactactataacaaccagagtaaggagtcccgctggacccggcccaaggac
ctggatgacctggaggctctagtcaaacaagaggctgcagggaaacggcagcagccacgg
acactacagcctcagccttctcagccacagcctgaccccccacctgtgccgcctggcccc
accttggtgcccacaggcctcctagaacctgagccaggtgggagtgaagattgcgatgtg
tcagaggctgcccagcctctggagcaggggttcctgcagcagccagaggagggccccagc
agttctgctggacagcgtcagccaccacagcaggaggaagaggaatcaaagccagaacca
gagaggtctggcctcagttggagcaatcgggagaaggcaaagcaggccttcaaggagctg
ctgagggataaggctgtcccctccaatgcttcgtgggaacaggccatgaagatggtggtc
accgacccccgttacagtgccttgcccaaactgagtgagaaaaagcaggcattcaatgcc
tacaaggcgcagcgggagaaggaggagaaggaagaggcccggctaaaagccaaggaggcc
aagcagaccttgcagcatttcttggagcagcatgagcgcatgacctccaccacccgctac
cggcgggcagaacagacctttggggagctggaggtctgggctgtggtccccgagagggat
cgaaaagaggtttatgatgatgtccttttcttcctggccaagaaggagaaggaacaggcc
aagcagctccggcgccgcaacatccaggccctgaagagcatcctggatgggatgagtagc
gtcaacttccaaaccacatggtcccaggcccagcagtacctcatggataaccccagcttt
gctcaggaccatcagctacagaacatggacaaggaagatgcgctgatctgctttgaggag
cacatccgtgctttggagagggaggaggaggaggagcgagagagggcccggcttcgggag
cggcgccagcagcgcaagaaccgggaggcctttcagaccttcctggatgagctgcacgag
acagggcagctgcactctatgtccacctggatggagctgtacccagcggtcagcactgat
gtccgctttgccaacatgctgggccagccgggctccacccctctggacttattcaagttc
tatgtggaggagttgaaggcacgattccatgatgagaagaagatcattaaggacatcctt
aaggaccggggcttctgcgtggaggtgaacacagcctttgaggacttcgcccacgtcata
agctttgacaagagggctgctgcgctggatgcaggcaacatcaagctgactttcaatagt
ctgctggagaaagcagaggcgcgggagagagagcgggagaaggaggaggcacgaaggctg
cggcgcagagaagctgcctttcgaagcatgctgaggcaggctgtgcctgctgtggagctg
ggcactgcctgggaagaggtccgtgagcgctttgtgtgcgactcagcctttgagcagatc
accctggagtcggagcggatccggctcttccgggagttcctgcaggtactggagactgaa
tgccagcacctccacagcaaaggccggaaacacggcagaaagggcaagaagcaccatcac
aagcgttcccactcgccctcaggctctgagtcagaagatgaagagctgcccccaccatct
ctccggccccccaggcggaggcggcggaacccctcagagtcaggctctgagccctcttcc
tcacttgattctgttgaaagtgggggtgctgcccttggaggacggggttccccatcctcc
cgccttctccttggatcagatcatggccttcggaaagtcaagaaaccaaaaaagagaact
aagaagagaagacacaagtcgaacagtcctgagagcgagacagaccctgaggagaaagcg
ggcaaggagagtgatgagaaagaaccagagcaggacaaggacagggacctccggcgggca
gagctccctaaccgctccgcaggctttggaatcaagaaggagaagacgggctgggacacg
tcggaaagcgagctgagcgagggtgagctggaaagacggcggcggacgctcctgcagcag
ctggatgaccaccagtga
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