Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112395372
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Entry
112395372 CDS
T08872
Symbol
SKIV2L
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112395372 (SKIV2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nasi03019
]
112395372 (SKIV2L)
Enzymes [BR:
nasi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112395372 (SKIV2L)
Messenger RNA biogenesis [BR:
nasi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
112395372 (SKIV2L)
mRNA degradation factors
3'-5' decay
Ski complex
112395372 (SKIV2L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
112395372
NCBI-ProteinID:
XP_024594270
UniProt:
A0A341AUT6
LinkDB
All DBs
Position
Unknown
AA seq
1247 aa
AA seq
DB search
MMETERIVLPPPDPLDLPLRAVELGCTGRWELLNVPGAPESTLPHGLPPCAPDLQQEAEQ
LFLSSPAWLPLHGVEHSARKWQRKMDPWSLLATLGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSATTSLSLRRPPGPISQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEEIDFE
KDLLTVPPGFKKGVDFAPEDHPAPAPGLLSLSRLLEPLDLGGGDEDESGEAVGQPGVPRR
DTVSASPCSAPLARASSLENLVLQEASTAVAPPEPPKPPPQEQWAIPVDVTSPVDDFYRL
IPQPAFRWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT
SPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEW
VIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIS
TVARPVPLEHYLFTGNSPKTQGELFLLLDSRGTFHTKGYYAAVEARKERMSKHAQTFGAK
QPTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLSSLDLTTSSEKSE
IHLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVL
FATETFAMGVNMPARTVVFDSTRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLC
KGRVPEMADLHRMTMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDS
KAHEQTLAELTKRLGALEEPDVTGQLADLPEYYSYGEELTETRSLIQRRIIESVNGLKSL
SAGRVVIVKSQKHHNALGVILQVSSSSTSRVFTTLVLCDKPTSEDPQERGPASPSVPYPD
DLVGFKLFLPEGPCGHTVAKLQPGDVAAITTKVLRLNGEKILEDFSKRQQPKFKKEPPSA
AATTAVQELLRLAQAHPAGPPTLDPVNDLQLKDVSVVEAGLRVRKLEELIRGAQCVHSPR
FPAQYLKLRGRMQIQEEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEVGTVKLAGR
VACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPSDQLPSTLKQGVERVR
AVAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRC
IQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgatggagacggagcgaatcgtgctacctcccccagatcctctggacctgccccttcgg
gccgtagagctgggatgcacagggcgttgggagctgctgaatgtgcctggggctccagag
agcacccttccccacggcctccctccctgtgccccagatctgcagcaagaagcagagcag
ttgtttctgtcatctcccgcctggctgcctctgcacggtgtggaacactcagcccgaaaa
tggcagaggaagatggatccttggtctctcctggccacactgggggccccagtcccctcc
gacctacaggcccaaagacacccaaccacaggccagatactaggctacaaggaggtcctg
ctagagaatacaaacctgtcggccacgacctccttgtctcttcgccggccacccgggccc
atctcccagtccctgtgggggaatccaacacagtacccattctggccagggggaatggat
gagcccaccataacagatctgagcactcgagaggaggctgaggaggagatagactttgag
aaagatcttcttactgtcccacctggcttcaagaaaggtgtggactttgcaccagaggat
cacccggctccagctcccggcctgctcagcctcagccgtctgctggagcccctggatttg
ggtgggggcgatgaggatgagagtggtgaggcagtgggacagccaggcgttcccagacgg
gacactgtttcagcctctccctgcagtgctcccctggcccgagcaagcagcttggagaac
ctagtgttgcaggaagcgtccacagctgtagctcccccagagcctcccaagcccccccct
caggagcagtgggccattcctgtggatgtcacctcccctgtcgatgatttctaccgactc
attccccagccagccttccggtgggcgtttgagccagacgtgtttcagaaacaggccatc
ctacacttggaacggcatgactcggtctttgttgcggctcacacgtccgcagggaagacg
gttgtggctgaatacgccattgcccttgcccagaaacacatgacgcgcaccatctatact
tcgcccatcaaggctctgagcaaccagaagttccgggacttccgaaacacatttggggat
gtgggacttctcaccggggacgtgcagctgcacccagaggcctcttgcctcattatgaca
acagagatccttcgctccatgctatacagtggctcggatgtcatccgagacctggagtgg
gtcatctttgatgaggttcactacatcaacgatgctgagcgcggagtcgtgtgggaggag
gtgctcatcatgcttcctgaccacgtctccatcatccttctgagtgctactgtccccaac
gcgcttgaatttgctgactggattgggaggctgaagcgtcgccagatctatgtgatcagc
actgttgctcgcccagtccccctggagcattatctcttcacggggaacagccccaagacc
cagggggagctcttcctgttgctggactcccgaggcaccttccacacaaaggggtactac
gcggctgtggaggccaggaaggagcggatgagcaaacacgcccagacctttggggccaag
cagcccacgcatcagggggggcctgcacaggaccgtggcgtgtacctgtccctcctggcc
tccctccgcacccgtgcacagctgcccgtggtggtgttcaccttctcccgtggccgctgt
gatgagcaggcctcgggcctctcctcccttgacctcaccacgagttcagagaagagtgag
attcacctcttcctgcagcgctgcctcgctcgcctccgaggctctgaccgccagctgccc
caggttctgcacatgtctgaactcctgcaccgcggcctgggtgtgcaccacagcggcatc
ctgcccatcctcaaggagatcgtggagatgcttttcagccgtggcctggtcaaggtcttg
tttgccacggagaccttcgccatgggtgtaaatatgccagcccggacagtggtgtttgac
tccacgcgtaagcacgatggctccaccttccgggacctgctccctggggagtatgtgcag
atggcaggccgggcgggccggaggggcctggaccccacaggcaccgtcatcctgctctgc
aagggccgcgtgcccgagatggcggacctgcaccgcatgacgatggggaagccgtcccag
ctgcagtcccagttccgcctcacgtacaccatgatcctcaacctgctgcgggtggacgcc
ctccgggtggaggacatgatgaagaggagcttctctgagtttccatcccgcaaggacagt
aaggcccatgaacagactctggctgagctgaccaagcggctgggggccttggaggagcct
gatgtgactggccaactcgctgacctgcctgagtattacagctacggggaggaactgaca
gagacccggagcctgatccagcgacgcatcatagagtctgtgaatgggctgaaatctctc
tcagcgggaagggtggtgattgtgaagagtcagaagcatcacaacgccctgggtgtgatc
cttcaggtctcctcgagctccaccagcagagtattcacgactctggtcttgtgtgataag
cccacatctgaggacccgcaggagagggggccagcctcccccagtgtgccctacccagat
gacctcgtgggattcaagctgttcctgcctgaagggccctgtggccacactgtggccaag
ctccagccgggagatgtggctgccatcaccaccaaggtgctccggctgaatggggagaag
atcttggaggacttcagcaagaggcagcaaccaaaattcaagaaggagcctccctctgcg
gccgcgacaactgctgtccaggaactactacgtctggctcaggcccacccagcaggaccc
cctacccttgaccctgtcaatgacctgcagctcaaggatgtgtcggtggtagaggcgggg
ctccgggtccggaagctggaggagctgatccggggggctcagtgtgtacacagtccccgt
ttccctgcccagtacctgaagctgcgggggcggatgcagatacaggaggagatggagcgg
ctgcgcttcctgctgtcggatcagtcgcttctgctgctccctgagtaccaccagcgagta
gaggtgctccgaaccctggggtacgtagatgaagtgggcaccgtgaagctggcagggcgg
gtggcttgtgccatgagcagccatgagctgctcctcactgaactcatgtttgacaacgcg
ctgagtgcccttcggcccgaggagatcgcggccctgctctccggcctggtctgccagagc
cccggggaccctagtgatcagctcccaagcacccttaaacagggggtggaacgtgtccgg
gctgtggccaagcggatcggtgaggtgcaggtggcctgtggcttgaaccagacagtggag
gaatttgtgggagagctgaattttggcctggtcgaggttgtgtacgagtgggcccggggc
atgcccttctctgagttggcagggctctcggggacccccgagggcctggtggtccgctgc
atccaacgcctggccgagatgtgtcgttcgcttcggggggcggcccgcctggtgggcgag
cctgtgctaggtgccaagatggagacggcagccaccctgctacggagggacatcgtcttt
gcagccagcctctacacccagtga
DBGET
integrated database retrieval system
