Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112395394
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Entry
112395394 CDS
T08872
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi03013
Nucleocytoplasmic transport
nasi03015
mRNA surveillance pathway
nasi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112395394 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
112395394 (DDX39B)
03015 mRNA surveillance pathway
112395394 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nasi03019
]
112395394 (DDX39B)
03041 Spliceosome [BR:
nasi03041
]
112395394 (DDX39B)
Enzymes [BR:
nasi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112395394 (DDX39B)
Messenger RNA biogenesis [BR:
nasi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112395394 (DDX39B)
Spliceosome [BR:
nasi03041
]
Complex C
Other components
EJC/TREX
112395394 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112395394 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
112395394
NCBI-ProteinID:
XP_024594319
UniProt:
A0A341AWE3
LinkDB
All DBs
Position
Unknown
AA seq
507 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDVNTLLPSLPPLPARCLLPLRALFLQTPLSFKRQEGGTCLFGSDDSLKRHTEAETV
SVRVCAGARETPEDLVGLTILIFHRPNGDMEDIHLRNGDMILQYYVKLKDNEKNRKLFDL
LDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRIL
VATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILN
DVQDRFEVNISELPDEIDISSYIEQTR
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgatgtggacaatgagctcttggattatgaagatgatgaagtggagaca
gcagctgggggagatggggctgaggcccctgccaagaaggatgtcaagggctcctacgtc
tccattcacagctctggctttcgtgacttcctgctcaagccagagttgctccgggccatt
gttgactgtggctttgagcatccatcagaagtccagcatgaatgcatccctcaggccatc
ctgggaatggatgtcctatgccaggccaagtcaggcatgggaaagacggcggtgtttgtg
ctggctacactgcaacagctggagccagttactgggcaggtgtctgtactggtgatgtgt
cacactcgggagttggcttttcagatcagcaaggaatatgaacgcttctctaagtacatg
cccaacgtcaaggtcgcagtgttttttggtggtctgtctatcaagaaagatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtggggacccctggccgcatcctagccctggct
cgaaataagagcctcaatctcaaacacattaaacactttatcttggatgaatgcgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagattcgcccagtctgccgc
aagttcatgcaagacgtaaatacccttctaccttctctccctccactccccgcccgctgc
ctcctccccctccgcgccctcttcctccagactcccttgtccttcaagcgccaagaaggg
ggcacatgcctatttgggagtgatgactccttgaagagacacacagaggcagagacagtt
agtgttagggtctgcgcgggcgccagggaaactccggaagacttggtcgggttaaccatt
ctgatcttccaccgtcctaatggggatatggaagacatccaccttcgtaatggggatatg
attctccagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgacctt
ctggatgtccttgaattcaaccaggtggtgatatttgtgaagtctgtgcagcgttgcatt
gccctggcccagctcctggtggagcagaacttcccagctattgccatccaccgtgggatg
cctcaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacgaattctt
gtggctaccaacctgtttggccgaggcatggacatcgagcgggtgaacattgcctttaac
tacgacatgcctgaggattctgacacatacctgcatcgggtggccagagcaggccggttt
ggcaccaagggcttagccatcacgtttgtgtcagatgagaatgatgccaagattctcaat
gatgtgcaggatcgctttgaagtcaatattagtgagctgcctgatgagatagacatctcc
tcctacattgaacagacgcggtag
DBGET
integrated database retrieval system
