Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112399395
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Entry
112399395 CDS
T08872
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112399395 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nasi03019
]
112399395 (PARN)
Enzymes [BR:
nasi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
112399395 (PARN)
Messenger RNA biogenesis [BR:
nasi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112399395 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
RRM_1
T6PP_C
NCBP3
Motif
Other DBs
NCBI-GeneID:
112399395
NCBI-ProteinID:
XP_024600333
UniProt:
A0A341BDN6
LinkDB
All DBs
Position
Unknown
AA seq
638 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALSYTSPNTSKCPVTIPEDQKKF
IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIV
ISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
YCPLPSDLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWINDTS
AFVSLSQPEQVPIAVNTSRYAESYRIQTYAEYVGTKHEEKQIKRKWTEDSWKEVERKRLN
TQCISYALQNHCYHANSLTATSTVGKRNLSPSQAEGVLEARVSGEISDTELEQTDPCAES
LSEGRKKAKKLKRMKKDLSPTGSISDSSAKLFEVPDTW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaatctccacaaagtgtaccaagccatagag
gaggcggacttcttcgccatcgatggggagttttcaggaatcagtgatggaccctcggtc
accgcattaacaaatggttttgacactccggaagaaaggtatcagaagcttaaaaagcat
tccatggactttttgctgtttcagtttggcctttgcacttttaagtatgactacacagat
tcaaagtatataacaaagtcttttaacttctatgttttcccgaaacccttcaatagatct
tcaccagatgtcaaatttgtttgtcagagctcaagcattgactttctagcaagccaagga
tttgattttaataaagtttttcgcaacggaattccatacttaaaccaggaagaagaaaga
cagttaagagagcagtatgatgaaaaacgtttacagtccaacggcgcaggcgctttgtcg
tacacgtctcctaacacctcaaaatgtcccgtgacgattcctgaggatcagaagaagttt
attgaccaagtggtagagaaaatagaagatttattacaaagtgaagaaaacaagaacttg
gatttagagccatgtactgggttccaaagaaaactaatttatcagactttgagctggaag
tatcccaaaggcattcatgttgagactttagaaactgaaaagaaagagcgctatattgtt
atcagcaaagtagatgaagaagaacgtaaaagaagagagcagcagaaacacgctaaggaa
caggaagaactgaatgatgctgtggggttttctagagtcattcatgccattgctaattcg
gggaaacttgtcattggacacaatatgctcttggatgtcatgcacacagttcatcagttc
tactgccctctgccctcggacttaaatgagtttaaggagatgacaacatgtgtcttcccc
agactcttggatacaaaattgatggccagcacacaaccttttaaggatatcattaacaac
acatcccttgcggaattggaaaagcggttaaaagagacacctttcaaccctcctaaagtt
gaaagtgcagaaggttttccaagttatgacacagcttctgaacagctccacgaggcaggc
tatgatgcttatatcacaggactatgtttcatctccatggcaaactacctaggttctttt
cttagtcctccaaagattcatgtgtctgccagatcaaaactcatcgaacctttttttaac
aagctatttctcatgagagtcatggatatcccctatctaaacttggaaggaccagacttg
cagcctaaacgtgatcacgtcctccatgtgacattccccaaagaatggaaaaccagtgac
ctttaccagcttttcagtgcctttggtaacattcagatatcctggatcaatgacacatca
gcatttgtttctctcagccaacctgaacaagtaccaattgctgtcaataccagcagatat
gcagagagctatcggatccagacctatgctgaatatgtggggacaaagcatgaggagaag
cagatcaagagaaagtggacagaagatagttggaaggaggttgagagaaagcggttaaac
acgcagtgcatctcctatgctttgcagaatcactgttaccacgccaatagtcttacagcc
accagcacagtaggaaagagaaatctgagtcccagtcaagcagaaggtgtcctggaggcc
agagtatcaggggagatttctgacactgagcttgagcagacagatccctgtgcagaatcc
ctctcagagggaaggaaaaaggccaagaaattaaaaaggatgaagaaggacctttctccg
acaggaagcatctcggacagctcagccaagctctttgaggtccctgacacgtggtaa
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