Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112399950
Help
Entry
112399950 CDS
T08872
Symbol
COL1A1
Name
(RefSeq) collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi04151
PI3K-Akt signaling pathway
nasi04510
Focal adhesion
nasi04512
ECM-receptor interaction
nasi04518
Integrin signaling
nasi04611
Platelet activation
nasi04820
Cytoskeleton in muscle cells
nasi04926
Relaxin signaling pathway
nasi04933
AGE-RAGE signaling pathway in diabetic complications
nasi04974
Protein digestion and absorption
nasi05146
Amoebiasis
nasi05165
Human papillomavirus infection
nasi05205
Proteoglycans in cancer
nasi05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
112399950 (COL1A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112399950 (COL1A1)
04518 Integrin signaling
112399950 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112399950 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
112399950 (COL1A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
112399950 (COL1A1)
09152 Endocrine system
04926 Relaxin signaling pathway
112399950 (COL1A1)
09154 Digestive system
04974 Protein digestion and absorption
112399950 (COL1A1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
112399950 (COL1A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
112399950 (COL1A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
112399950 (COL1A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
112399950 (COL1A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
112399950 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nasi00536
]
112399950 (COL1A1)
Glycosaminoglycan binding proteins [BR:
nasi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112399950 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
112399950
NCBI-ProteinID:
XP_024601210
UniProt:
A0A341BEN6
LinkDB
All DBs
Position
Unknown
AA seq
1463 aa
AA seq
DB search
MFSFVDLRLLLLLAATALLTHGQEEGQEEGQEEDIPPVTCVQNGLRYHDRDVWKPVPCQI
CVCDNGNVLCDDVICDEIKNCPNAKVPAGECCPVCPEGEGIARGLETTGVEGPKGDTGPR
GPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQMSYGYDEKSTGISVPGPM
GPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRP
GERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQM
GPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGSTGPAGPPGFPGAVGAKGEAGPQGSR
GSEGPQGVRGEPGPPGPAGAAGPAGNPGTDGQPGAKGANGAPGIAGAPGFPGARGPSGPQ
GPSGPPGPKGNSGEPGAPGNKGDTGAKGEPGPTGIQGPPGPAGEEGKRGARGEPGPAGLP
GPPGERGGPGSRGFPGADGLAGPKGPAGERGAPGPAGPKGSPGEAGRPGEAGLPGAKGLT
GSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGSRGQAGVMGFPGPKGAAGEPGKAGERGVP
GPPGAAGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPSGPPGEAGKPGEQ
GVPGDIGAPGPSGARGERGFPGERGVQGPSGPAGPRGSNGAPGNDGAKGDAGAPGAPGNQ
GAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDK
GETGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGAP
GTAGPTGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPSGPA
GKEGSKGPRGETGPAGRAGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVV
GLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAE
GSPGRDGSPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPIGPV
GARGPTGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPR
GPPGSAGTPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPPGPPGPPSGGYDFSFL
PQPPQEKAQDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRXXXARTCRD
LKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVAQKNWYISKNSKDK
RHVWYGESMTGGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQT
GNLKKALLLQGSNEIEIRAEGNSRFTYSVTYDGCTSHTGAWGKTVIEYKTTKTSRLPIID
VAPLDVGAPDQEFGIDVGPVCFL
NT seq
4392 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggacctccggctcctgctcctcttagcggccaccgctctcctgacg
cacggccaagaggagggccaagaagaaggccaagaagaagacatcccaccagtcacctgc
gtacagaacggcctcaggtaccatgaccgagacgtgtggaaacccgtgccctgccagatc
tgtgtctgcgacaacggcaacgtgttgtgcgatgacgtgatctgcgacgaaatcaagaac
tgtcccaacgccaaagtccccgcgggcgagtgctgccccgtctgcccggaaggcgagggt
atagctcggggcctggaaaccactggagtcgagggacccaaaggagacactggcccccga
ggcccaaggggacccgctggcccccctggccgagatggcattcctggacaacctggactt
cccggaccccccggacccccaggacctcccggaccccctggcctcggaggaaactttgct
ccccagatgtcttatggctacgatgagaaatcaacaggaatttctgtgcctggccccatg
ggtccttctggtcctcgtggtctccctggcccccctggcgcacctggtccccaaggtttc
caaggcccccctggtgagcctggcgagcctggagcctcaggtcccatgggtccccgtggt
ccccctggcccccctggcaagaacggagatgatggtgaagctggaaagcctggtcgtcct
ggtgagcgcgggcctcctggacctcagggggcccggggattgcccggaacagctggcctc
cctggaatgaagggacacagaggtttcagtggtttggatggtgccaagggagatgctggt
cctgctggtcccaagggtgagcctggtagccctggtgaaaatggagctcctggtcagatg
ggcccccgtggtctgcctggtgagagaggtcgccctggagcccctggccctgctggtgct
cgtggaaatgatggtgctactggtgctgctggaccccctggttccactggccccgctggt
cctcctggtttccctggtgctgtcggtgctaagggtgaagctggtccccaaggatcccga
ggctctgaaggtccccagggtgtgcgtggcgagcccggcccccctggccctgctggtgcc
gctggccctgctggaaaccctggtactgatggacagcctggtgctaaaggtgccaatggc
gctcctggtatcgctggtgctcctggcttcccaggtgcccgaggcccctctggaccccag
ggtcccagcggcccccctggtcccaagggtaacagcggtgaacctggcgctcctggcaac
aaaggagacaccggcgccaagggagagcccggccccactggtattcaaggtccccctggc
cctgctggggaagaaggaaagcgaggagcccgaggtgaacccggacctgctggcctgcct
ggaccccctggcgagcgtggtggacccggtagccgcggtttccctggcgcagatggtctt
gctggtcccaagggtcccgctggtgaacgtggtgctcctggccctgctggccccaaaggt
tctcctggtgaagctggtcgccccggtgaagctggtctgcctggtgccaagggtctgact
ggaagccctggcagccctggtcctgatggcaaaactggcccccctggtcctgctggtcaa
gatggccgccccggacccccaggccctcctggtagccgtggtcaggccggtgtgatgggt
ttccctgggcctaaaggtgctgctggagaacccggcaaggctggagaacgaggcgttcct
ggaccccccggcgctgctggtcctgctggcaaagacggagaagctggagcccagggacct
cccggacctgctggccctgctggtgagagaggtgaacaaggccctgctggctcccccgga
ttccagggtctccctggcccttctggtcctcctggtgaagcaggcaaacccggtgaacag
ggtgttcctggagacattggtgcccccggcccctctggagcaagaggcgagagaggtttc
cctggcgagcgtggtgtgcaagggccctccggtcctgcaggtccccgtgggtccaacggt
gcccctggcaatgatggtgctaagggcgatgctggtgcccctggagcccctggtaaccag
ggcgcccctggccttcaaggaatgcctggtgaacgaggtgcagcaggtctcccaggccct
aagggtgacagaggcgatgctggtcccaaaggtgctgatggtgctcctggcaaagatggc
gtccgtggtctgactggtcccattggtcctcctggccccgctggtgcccctggtgacaag
ggtgaaactggtcctagcggccctgctggtcccactggagctcgtggtgcccccggagac
cgtggtgagcctggtccccccggccctgctggcttcgctggcccccctggtgctgatggc
caacctggtgctaaaggcgaacctggtgatgctggtgctaaaggcgatgctggtgcccct
ggcactgctggacccactggacctcctggccccattggtaacgttggtgctcccggaccc
aaaggtgctcgtggcagcgctggtccccctggtgctactggtttccctggtgctgctggc
cgagtcggtccccctgggccctctggaaatgctggaccccctggaccttctggtcctgct
ggcaaagaaggcagcaaaggcccccgcggtgagaccggccccgctgggcgtgctggtgaa
gtcggtcctcccggtccccctggccccgctggtgagaaaggagcccctggtgctgatgga
cctgctggcgctcctggcactcccggacctcagggcattgctggacagcgtggcgtggtt
ggcctgcccggtcagcgaggagaaagaggcttccctggtcttcctggcccctctggtgaa
cccggcaaacaaggtccttctggagcaagtggtgaacgtggcccccctggtcccatgggc
ccccccggattggctggaccccctggcgagtctggacgtgagggagcccctggtgccgaa
ggatcccctggacgagatggttctccgggccccaagggtgaccgtggtgagaccggccct
gctggaccccctggtgctcctggtgcccctggtgcccctggccccgtcggccctgctggc
aagagcggcgatcgtggcgagactggtcctgctggtcccgctggtcccattggccccgtt
ggtgcccgcggccccaccggaccccaaggcccccgtggtgacaagggtgagacaggcgaa
cagggcgacagaggcattaagggtcaccgtggcttctctggtctccagggtccccctggc
cctcccggctctcctggtgagcaaggtccctccggagcttctggtcctgctggtccccgc
ggtccccctggctccgctggtactcctggcaaagatggactcaacggtctcccaggcccc
atcggtccccctggtcctcgtggtcgcactggtgatgctggtcctgctggtccccccggc
cctcccggaccccctggtccccctggtcctcccagcggtggttacgacttcagcttcctg
ccccagccacctcaagagaaggctcaggatggtggccgctactaccgggccgatgatgcc
aatgtggtccgtgaccgtgacctcgaggtggacaccactctcaagagcctgagccagcag
atcgagaacatccggagtcctgaaggcagccgnnnnnnnnntgcccgcacctgccgtgac
ctcaagatgtgccactccgactggaagagcggagaatactggattgaccccaaccaaggc
tgcaacctggatgccatcaaggtcttctgcaacatggagacaggcgagacctgcgtgtat
cccactcagcccagcgtggcccagaagaactggtacatcagcaagaactccaaggacaag
aggcatgtctggtacggcgagagcatgaccggcggattccagttcgagtacggcggccag
ggctccgatcctgccgatgtggccatccagctgactttcctgcggctgatgtccactgag
gcctcccagaacatcacctaccactgcaagaacagcgtggcctatatggaccagcagact
ggcaacctcaagaaggccctgctcctccagggctccaacgagattgagatccgggccgag
ggcaacagccgcttcacctacagcgtcacctacgacggctgcacgagtcacaccggagcc
tggggcaagacagtgatcgaatacaaaaccaccaagacctcccgcttgcccatcatcgat
gtggcccccttggacgttggcgccccagaccaggaattcggcatcgacgttggccctgtc
tgcttcctgtaa
DBGET
integrated database retrieval system
