Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112400301
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Entry
112400301 CDS
T08872
Symbol
XAB2
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112400301 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nasi03019
]
112400301 (XAB2)
03041 Spliceosome [BR:
nasi03041
]
112400301 (XAB2)
Messenger RNA biogenesis [BR:
nasi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
112400301 (XAB2)
Spliceosome [BR:
nasi03041
]
Complex B
Other components
Prp19-related factors
112400301 (XAB2)
Complex C
112400301 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
ARM_TT21
TPR_15
TPR_1
ARM_TT21_C
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
112400301
NCBI-ProteinID:
XP_024601780
UniProt:
A0A341BG94
LinkDB
All DBs
Position
Unknown
AA seq
882 aa
AA seq
DB search
MVVTARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLSV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHEGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGQKLERARDLFEQALDMCXQLEEEWGLARHA
MAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLSDEHAREMCLRFA
DMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQA
TYNTQVNFMASQMLKVTGSATGTVSDLAPGQSGMDDMKLLEQRAEQLAAEAEQDQPSRAQ
SKILFVRSDASREELAQLAQQANPEEIELGEDEDEMDLEPNEVRLEQQGIGRCGEVGQLG
SRPGHTLHPNPAEPVLGSERPVSLPPEALSLEGAPAPLPLSR
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgacggcgcgcctctcgaggcccgagcggccggatcttgtcttcgaggaggag
gacctcccctatgaggaggaaatcatgcggaaccagttctccgtcaaatgctggctccgc
tacattgagtttaagcagggtgccccgaagcccagactcaatcagctctatgagcgggcg
ctgaagctgctgccctgcagctacaaactctggtaccgctacctgaaggcacgccgggca
caggtgaagcatcgctgtgtgactgaccctgcctacgaagatgtcaacaactgccacgag
agggcctttgtgttcatgcacaagatgccccggctgtggctagattactgccagttcctg
atggaccagggacgcgtcacacacacgcggcgcactttcgaccgtgccctccgagcgttg
cccatcacacagcactctcgtatttggcccttgtacctgcgcttcctgcgctcacacccc
ctgcctgagactgctgtgcggggctaccggcgcttcctcaagctgagccccgagagtgcc
gaggagtacatcgagtacctcaagtcgagcgaccggctggacgaggccgcacagcgcctg
gccaccgtggtgaacgacgagcgcttcgtgtccaaggccggcaagtccaactaccagctg
tggcacgagctctgcgacctcatctcccagaacccagacaaggtgcagtctctcagtgtg
gacgccatcatccgcgggggcctcacccgcttcactgaccaactgggcaagctctggtgc
tcgctggccgactactacatccgcagcggtcacttcgagaaggctcgggacgtgtacgag
gaggccatccggaccgtgatgaccgtgcgggacttcacccaggtgttcgacagctatgcc
cagtttgaggagagcatgattgcggcgaagatggagacggcctcggagctggggcgggag
gaggaagacgacgtggacctggagctacgcctggctcgctttgagcagctcatcagccgg
cggcccctgctcctcaacagcgtcctgctgcgccagaacccgcaccacgtgcacgagtgg
cacaagcgcgtggccctgcacgagggccgcccgagggagatcattaacacgtacacggag
gccgtgcagactgtggaccccttcaaggccaccggcaagccccacaccctgtgggttgcg
ttcgccaagttttacgaggacaacgggcagctggatgacgcccgtgtcatcctggagaaa
gccaccaaggtgagcttcaagcaggtggacgacctggccagcgtatggtgcgagtgtggc
gagctggagctccggcacgagaactacgaccaggccttgcggctgctgcgaaaggcgacg
gcgctgcccgcccgccgcgccgagtacttcgacggctcagagcccgtgcagaaccgcgta
tacaagtctctgaaggtgtggtcaatgctggccgacctggaggagagcctcggcaccttc
cagtccaccaaagccgtctatgaccgcatcctggacctgcgcatcgccacaccccaaatc
gtcatcaactacgccatgttcctggaggagcacaagtactttgaagagagtttcaaggca
tacgagcgtggcatctcgctgttcaagtggcccaacgtgtccgacatctggagtacctac
ctgaccaagttcatcgcccgctacgggggccagaagctggagcgggcacgggacctgttt
gagcaggcactagatatgtgcnnacagctggaggaggagtggggcttggcccggcacgcc
atggccgtgtatgagcgcgccaccagggccgtagagcccgcccagcaatacgacatgttc
aacatctacatcaagcgggcggctgagatctacggggtcacccacacccgcagcatctat
cagaaggccatcgaggtgctgtcagacgagcacgcccgggagatgtgcctgcggttcgcg
gacatggagtgcaagctcggggagatcgaccgcgcccgggccatctacagcttctgctcg
cagatctgtgacccccggacgaccggggccttctggcagacgtggaaggacttcgaggtc
cggcacggcaacgaggacaccatccgggagatgctgcggatccgccgcagcgtgcaggcc
acgtacaacactcaggtcaacttcatggcctcccagatgctcaaggtgacgggcagcgcc
acgggcactgtgtccgacctggcccctgggcagagcggcatggacgacatgaaactgctg
gaacagcgggccgagcagctggcagctgaggctgagcaggaccagccctcgcgggcccag
agcaagatcctgtttgtgaggagtgacgcctcccgggaggagctggcccagctggcccag
caggccaacccggaggagatcgagctgggtgaggacgaggacgagatggacctggagccc
aacgaggtgcgcctggagcagcagggcattggccggtgtggggaggtggggcagctgggc
tccaggccagggcacacgctccaccctaaccccgcagagccagttctgggctccgagagg
ccagtctctctgccgcctgaggccctgagcctggagggggcccctgcgcccctccctctc
agcagatag
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