Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112400539
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Entry
112400539 CDS
T08872
Symbol
PBRM1
Name
(RefSeq) protein polybromo-1 isoform X1
KO
K11757
protein polybromo-1
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi03082
ATP-dependent chromatin remodeling
nasi05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112400539 (PBRM1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
112400539 (PBRM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nasi03021
]
112400539 (PBRM1)
03036 Chromosome and associated proteins [BR:
nasi03036
]
112400539 (PBRM1)
Transcription machinery [BR:
nasi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112400539 (PBRM1)
Chromosome and associated proteins [BR:
nasi03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
112400539 (PBRM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
112400539
NCBI-ProteinID:
XP_024602122
UniProt:
A0A341BK47
LinkDB
All DBs
Position
Unknown
AA seq
1704 aa
AA seq
DB search
MGSKRRRATSPSSSVSGDFDDGHHSVSTPGPSRKRRRLSNLPTVDPIAVCHELYNTIRDY
KDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLF
NNAKAYYKPDSPEYKAACKLWDLYLRTRNEFVQKGEADDEDDDEDGQDNQGTVTEGSSPS
YLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNG
SYKSVHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHHEMTKSSLRMR
TPSNLAAARLTGPSHSKGSLGEERNPTNKYYRNKRAVQGGRLSAITMALQYGSESEEDAA
LAAARYEEGESEAESITSFMDVSNPFYQLYDTVRSCRNNQGQLIAEPFFHLPSKKKYPDY
YQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVM
QAKKKELARRDDIEDGDSMISSATSDTGSAKRKRNTLDSEMLGLRRLSSKKNIRKQRMKI
LFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEG
MIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKDKRKELGPLPDDDDMASPKLKLSRKS
GISPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMD
MEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLEG
DEDSHVPNVTLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVDPSFPNKPPLTFDII
RKNVENNRYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGEI
LLSPALSYTTKHLHNDVEKEKKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAGLSGLHR
TYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETF
HLATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCESRYSA
KTKSFKKIKLWTMPISSVRFVPRDVPLPVVRVASVFANADKGDDEKNTDNSEDSRTEDSF
NLEKEKEDVPVEMSNGEPGCHYFEQLRYNDMWLKVGDCVFIKSHGLVRPRVGRIEKVWVR
DGAAYFYGPIFIHPEETEHEPTKMFYKKEVFLSNLEETCPMTCILGKCAVLSFKDFLSCR
PTEIPENDILLCESRYNESDKQMKKFKGLKRFSLSAKVVDDEIYYFRKPTVPQKEPSPLL
EKKIQLLEAKFAELEGGDDDIEEMGEEDSEVIEPPSLPQLQTPLASELDLMPYTPPQSTP
KSAKGSAKKEGSKRKINMSGYILFSSEMRAVIKAQHPDYSFGELSRLVGTEWRNLETAKK
AEYEERAAKVAEQQERERAAQQQQPSASPRAGTPVGALMGVVPPPTPMGMLNQQLTPVAG
MMGGYPPGLPPLQGPVDGLVSMGSMQPLHPGGPPPHHLPPGVPGLPGIPPPGVMNQGVAP
MVGTPAPGGSPYGQQVGVLGPPGQQAPPPYPGPHPPGPPVIQQPTTPMFVAPPPKTQRLL
HSEAYLKYIEGLSAESNSISKWDQTLAARRRDVHLSKEQESRLPSHWLKSKGAHTTMADA
LWRLRDLMLRDTLNIRQAYNLENL
NT seq
5115 nt
NT seq
+upstream
nt +downstream
nt
atgggttccaagagaagaagagctacctccccttccagtagtgtcagcggagactttgat
gatgggcaccattctgtgtccacgccaggcccaagcaggaaaaggaggagactttccaat
cttccgactgtagaccctattgccgtgtgccatgaactctacaacaccatccgagactat
aaggatgagcagggcaggctcctctgtgagctcttcattagggcaccaaagcgaagaaat
caaccagactattatgaagtggtttctcagcccattgacttgatgaaaatccaacagaaa
ctaaaaatggaagagtatgatgatgttaatctgctgactgctgacttccagttgcttttt
aacaatgcaaaggcctattacaagccagattctcctgaatataaagctgcttgcaaactc
tgggatttgtaccttcgaacaagaaatgagtttgttcagaaaggagaagcagatgatgaa
gatgatgatgaagatgggcaagacaatcaaggcacagtgactgaaggatcttctccaagt
tacttgaaggagatcttggagcagcttcttgaagccatagttgtagccacaaatccatca
ggacgtctcattagcgaactttttcagaaactgccttctaaagtgcaatatccagactat
tatgcaataattaaggagcctatagacctcaagaccattgcccagaggatacagaatgga
agctacaagagtgttcatgcaatggccaaagatatagatctcctagcaaaaaatgccaaa
acttataatgagcctggttctcaagtattcaaggatgcaaattctattaagaaaatattt
tatatgaaaaaggcagaaattgaacatcatgaaatgactaagtcaagccttcggatgagg
actccatcaaatttggctgcagccagactgacaggtccttcgcacagtaaaggcagcctt
ggtgaagagagaaatcccactaacaagtactaccgtaataaacgagcagtccaagggggt
cgtttatcagcaattaccatggcacttcagtatggctcagaaagtgaagaggatgctgct
ttagctgctgcacgttatgaagaaggagagtcggaagcagagagcattacttcatttatg
gatgtttcaaatcctttttatcagctttacgacacagttaggagctgtcggaataaccaa
gggcagctaatagctgaaccttttttccatttgccttcaaagaaaaaataccctgattat
tatcagcaaattaaaatgcccatatcactacaacagatcagaacaaagctaaagaatcaa
gaatatgaaactttagatcatttggagtgtgatctgaatttaatgtttgaaaatgccaaa
cgctataatgttcccaactcagccatctacaagcgagttctaaaactgcaacaagtcatg
caggcaaagaagaaggagcttgccaggagagatgacattgaggatggagacagcatgatt
tcttcagcaacctctgatactggtagtgccaaaagaaaaaggaacactcttgacagtgag
atgttgggtctcaggaggctatccagtaaaaagaacattcgaaagcagcgaatgaaaatc
ttgttcaatgttgttcttgaagctcgtgagccaggttcaggcagaagactttgtgattta
tttatggttaaaccatccaaaaaggactatcctgattattataaaatcatcttggagcca
atggacttgaaaataattgaacataacatccgcaatgacaaatatgcaggggaagaggga
atgatagaagacatgaagctgatgttccggaatgccaggcactacaacgaggagggctcc
caggtgtacaatgatgcgcacatcctggagaagttactcaaggataaaaggaaagagctg
ggcccactgcctgatgatgatgacatggcttctcccaaactcaaactgagtaggaagagc
ggtatttctcctaaaaaatcaaaatatatgactccaatgcagcagaaactaaatgaagtc
tatgaagctgtaaagaactatactgataagaggggtcgccgcctcagtgccatatttctg
aggcttccctccagatctgagctgcctgactactatttgaccattaaaaaacccatggac
atggaaaaaattcgaagccacatgatggccaacaaataccaagatatagactccatggtt
gaggacttcgtcatgatgtttaacaatgcctgtacatacaatgagcccgagtctttgatc
tacaaagatgcccttgtcctacacaaagtcctgcttgaaactcggagagacctagaagga
gatgaggactctcatgtcccaaatgtaaccttgctgattcaggagcttatccataatctt
tttgtgtcagtcatgagtcatcaggatgatgaaggaagatgctacagtgattccctagca
gaaattcctgctgtggatcccagctttccaaacaaacctcctcttacttttgacataatt
aggaagaatgttgaaaataatcgctaccggcggctcgatttatttcaagagcatatgttt
gaagtattggagagggcaagaaggatgaatcggacagattctgaaatatatgaggatgcg
gtagaacttcagcagttttttattaaaattcgtgatgaactctgcaaaaatggagagatc
cttctttcaccagcactcagctataccacaaaacatttacataatgatgtggagaaagag
aaaaaggaaaaactaccgaaagaaatagaggaagataaactaaaacgagaagaagaaaaa
agagaagctgaaaagagtgaagattcctctggagctgcaggcctctcaggcttacatcgc
acatacagccaggactgcagctttaagaacagtatgtaccatgttggagattatgtctat
gtggagcctgcagaggccaatctacaaccacatatagtctgtattgagagactgtgggaa
gattctgctggtgaaaaatggttgtatggctgttggttttatcggccaaatgaaacattc
catttggctacacgaaaatttctagaaaaagaagtttttaagagtgactattacaataaa
gttcctgttagtaaaattctaggaaaatgtgtggtcatgtttgttaaggaatactttaaa
ttatgcccagaaaactttcgagatgaggatgtttttgtctgtgaatcacggtattctgcc
aaaaccaaatcttttaagaaaattaaactatggaccatgcccatcagctcagttagattt
gtccctcgagatgtgcccttgcctgtggtccgagtggcctctgtatttgcaaatgcggat
aaaggggatgatgagaagaacacagacaactcagaggacagtcgaactgaagacagtttt
aacttggaaaaggagaaagaagatgtccctgtggaaatgtctaacggtgaaccaggttgc
cactactttgagcagctccggtataatgacatgtggctgaaggttggcgactgtgtcttc
atcaagtcccatggcctggtgcgccctcgtgtgggcagaattgaaaaggtatgggtccga
gatggagctgcatatttttacggccccatctttattcacccagaagagacggaacacgag
cccacaaaaatgttctacaagaaagaagtgtttctgagtaatctggaagaaacctgcccc
atgacatgtattctaggaaagtgtgctgtattgtcattcaaggacttcctctcctgcagg
ccaactgaaattccagaaaatgacattctgctttgtgagagccgctacaatgaaagtgac
aagcagatgaagaaattcaagggactgaagaggttttcactctctgctaaagtggtagat
gatgaaatttattacttcagaaaaccgactgttcctcagaaggagccctcacctttattg
gaaaagaagatccagttgctagaagctaaatttgctgagttagaaggtggagatgatgat
attgaagagatgggagaagaggatagtgaggtcattgagcctccttctctacctcaactt
cagactcccctggccagtgagctggatctcatgccctacacacccccacagtctacccca
aagtctgccaaaggcagtgcaaagaaggaaggctccaaacggaaaatcaacatgagtggc
tacatcctgttcagcagtgagatgagagctgtgattaaggcccagcacccagactactct
tttggtgagctcagccgactggtggggacagaatggagaaaccttgagacagccaagaaa
gcagaatatgaagagcgggcagctaaagttgctgagcagcaggagagagagcgagcagca
cagcaacagcagccgagtgcttctccccgagcaggcacccctgtgggggctctcatgggg
gtggtgccaccaccaacaccaatggggatgctcaatcagcagttgacacctgttgcaggc
atgatgggtggctatccgccaggccttccacctttgcagggcccagttgatggccttgtt
agcatgggcagcatgcagccacttcaccccggggggcctccaccccaccatcttccgcca
ggtgtgcccggcctcccgggcataccaccaccgggtgtgatgaaccaaggagtggcccct
atggtagggactccagcaccaggtggaagtccatatggacagcaggtaggtgttttgggg
cctccagggcagcaggcaccacctccatatcctggcccacatccacccggcccccctgtc
atacagcagccaacaacacccatgtttgtggctcccccaccgaagactcaacggcttctc
cactcagaggcctacctaaaatatattgaaggactcagtgctgagtccaacagcattagc
aagtgggaccagaccctagcagcccgaagacgcgatgtccatttgtcaaaagaacaggag
agccgactcccctctcactggctgaaaagtaaaggggcccacaccaccatggcagacgcc
ctctggcgccttcgggatctgatgctccgagacacccttaatattcgccaagcatacaat
ctagaaaacctttaa
DBGET
integrated database retrieval system
