Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112401596
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Entry
112401596 CDS
T08872
Symbol
SCAF8
Name
(RefSeq) protein SCAF8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nasi03021
]
112401596 (SCAF8)
03041 Spliceosome [BR:
nasi03041
]
112401596 (SCAF8)
Transcription machinery [BR:
nasi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112401596 (SCAF8)
Spliceosome [BR:
nasi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
112401596 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
DAXX_hist_bd
Motif
Other DBs
NCBI-GeneID:
112401596
NCBI-ProteinID:
XP_024603687
UniProt:
A0A341BPP4
LinkDB
All DBs
Position
Unknown
AA seq
1270 aa
AA seq
DB search
MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPGTPVTPVTPANVVQGLPDPWVS
QITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQL
TAAAAAASTLNPLEQGVSFNKKLMDRFDFGEDSEHSEEPKKEIPASQLSHVSESVNNSIF
HQIAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFGSEHSVSPSQGSSQQHFLEPEA
NLDDSIDIQQQDMDIDEGQDGVEEEIFEQEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRS
GSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIG
SKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGGMIDQETVNTEWE
SVKSSEPVKETVQTTQSPPPVEKETVVTTQAEVFPPPVAMLQIPVAPAVPTVSLVPPAFP
VSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPTIPPVVPTSLVQPPL
SMTPETVKDVGFGSLVLPGGSVASSLATSTLPAGSVFNPPTKQAEPEEKVPHLIDHQISS
GENTRSVIPNDVSGGSAILGGQPPNVTNNSGILGVQRPNVSSNNEILGVRPSNVSNSSGI
IGAQPPNILNNSGILGIQPPSVSSSSGLLGMLPPNIPNNSGLMGVQPPSVPNTSGLLGTQ
PPAGPQNLPPLNLSNQRMPAMPMLDIRPGLIPQTPGPRFPLMQPGIPPQRGLPPPAVLDS
ALHPPPRGPFAPGDIFSPPERPFLVPGRQSVDNVANPEKRIPLGNDNIQQEGDRDYRFPP
IETRETISRPPPVDVRDVVGRPVDPREGPGRPPLDGRDHFGRPPVDIRENLVRPGIDHLG
RRDHFGFTPEKPWGHRDFDEREHRVLPVYGGPKGLHEERGRFRSGNYRFDPRSGPWNRGF
GQEVHRDFDDRRRPWERQRDRDDRDFDFCREINGSRFGRDRIQNTWVPPPHARVFDFFEG
ATSQRKGDNVPQVNGENTERHAQPPPLPAQSDPELYEKLSSSSEISKEKSDTVADIESEP
VVESTETEGT
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtgaaaaccttcaatagcgagttgtattccctgaatgactacaagccaccc
atttctaaagcgaaaatgacccaaattactaaagcagccatcaaagctattaagttttat
aaacatgtggtacagagtgttgagaaattcattcagaaatgtaaaccagaatacaaggta
cctggactttatgttattgactctattgtacgacaatctcgacatcagtttggtcaagaa
aaggatgtgttcgcacccagatttagtaataacatcattagcactttccagaatttatat
cgttgccctggagacgacaagagtaaaatagtgagagtattaaacttgtggcagaagaat
aatgtatttaaaagtgagattattcaacctcttttggatatggcagcagggattcctcct
ccagttgtcacacctgttttggccagtactactgctgctatgagcaataccccaggaact
cctgtgacacctgttactccagccaatgtggtccaaggtttacctgatccgtgggtgtct
cagataacaaatacagatacacttgcagctgtagctcagatcttacaaagtcctcaaggc
caacagcttcagcagttaatacagactttacagatacagcagcagaagcctcagccttcc
atcttgcaagccctggatgccggccttgtggtccagctgcaggctcttacagcacagctc
acagcagcggctgcagcagccagcacccttaatcccctagaacagggagtgtcttttaac
aagaagttgatggataggtttgattttggggaagattctgagcatagtgaagaacccaaa
aaggaaattccagcttctcaactttctcatgtttcagaatctgtgaacaattccatcttt
catcagatagcagaacagctacagcagcaaaatcttgaacatctcagacagcaactcctg
gaacagcaacagcctcaaaaggcaactcctcaggatagtcaagaaggaacatttgggtca
gagcattccgtgtcaccatcacaagggagcagtcaacagcatttccttgaacctgaagca
aatttggatgattccatagatattcagcagcaggatatggatatagatgaagggcaagat
ggagtagaagaggagatctttgaacaggaagcaaagaaagtggctgttcgctcaagatca
agaacgcattcacgatctcgttcaagatcaccaagaaaacgaagatctaggtcacgatct
ggttctcgaaagcgtaaacacagaaagcgatcacgctctcgctctagagaaagaaaaagg
aaatcatcacgttcatactcaagtgaaagaagagctagagaaagggagaaagaacgacag
aagaagggattgcctccaattagatctaaaacattaagtgtatgtagtactactctgtgg
gttggtcaggtagacaagaaggcaacacagcaagatttaaccaacctgtttgaagagttt
ggacagattgaatccattaatatgattcctcccaggggctgtgcttatgtctgcatggtt
catcgacaagatgcatttcgggctcttcagaaacttagttccgggtcatataaaattggg
tccaaggtcattaagattgcttgggctttaaacaaaggtgtaaaaacagaatacaaacaa
ttctgggatgtggatcttggagtaacatatataccatgggaaaaagttaaagtggatgac
ttggaaggttttgcagaaggaggcatgattgatcaggaaactgtaaatactgagtgggaa
agtgtgaaaagctcagaacccgttaaagagacggtccagacaactcagagcccacctcca
gttgaaaaggagacagtggtcacaacccaggcagaggttttccctccacctgttgctatg
ttacagattccagtagctccagcagtgcctacagttagtttagtcccaccagcatttcct
gtgtcaatgccagttcctcctcctggattcagtccaattcctccaccgccttttctccgc
gcaagttttaacccttcacaaccacctcctggtttcatgccacctccagttccaccacct
gttgtaccaccacctactattccaccagtagtaccaacatctttagtgcagccgccatta
tctatgactccagaaactgtgaaagatgttggatttggtagccttgttttgccaggtggt
tctgttgccagcagtcttgctacttccactctgccagctggaagtgtttttaatcctcca
actaaacaagcagagcctgaagaaaaagtacctcatcttatagaccaccagatttcttct
ggtgaaaacaccagatcagtgattccaaatgatgtttcaggtggctctgcgattttagga
ggacagccgccaaatgtgacgaacaattctggaattctgggagtccaaagaccaaatgta
tcaagtaataatgaaattcttggagtccggccatctaatgtttccaatagttctgggatt
attggagcccagccaccaaatattctaaataactctggaattttgggaatacagccacca
agtgtgtcaagtagttctggacttctgggcatgctacccccaaatatacctaacaattcc
ggacttatgggagtacagccacccagtgttccaaatacttctggacttttgggaacacag
ccaccagctgggcctcaaaatttaccccctttaaatctttctaatcaaaggatgcctgca
atgccaatgttagacattcgtccaggactaataccacagacacctggaccaagattccct
ttaatgcagcctggaattccacctcagcggggactccctcccccagcagtgcttgattca
gctcttcatccaccaccccgtggtccttttgctccaggagatatttttagtccacctgaa
agaccttttctagttcctggaagacaaagtgtagacaatgttgctaatccagaaaaaagg
ataccacttgggaatgataacattcaacaggaaggagatagagattaccggtttcctccc
atagaaaccagggaaaccattagtagacctcccccggtggatgttagggatgtggttgga
cggcctgtagatccaagagaaggtcctggaaggcctccattagacggtagagatcatttt
ggacgacctcctgtagatattagagagaatcttgtgaggccaggcatagatcatcttggt
cgaagagaccactttggctttactccagagaagccctgggggcatagagattttgacgag
agagagcatcgggttctgcctgtctatggtggtccaaaaggcttacatgaagaaagaggt
agatttcggtctggaaactatcggtttgatcctagaagtggtccttggaacagaggattt
ggacaagaagttcacagagattttgatgaccgcagaagaccctgggagaggcaaagggat
agggatgacagagattttgatttctgcagagaaattaatggaagtcgttttggacgagat
agaattcaaaacacctgggtcccccctcctcatgctcgggtttttgatttttttgaaggg
gccacttctcaacggaaaggtgataatgtgcctcaggttaatggtgaaaataccgagaga
catgctcagccaccacctctaccagcgcagagtgatcctgaactttatgaaaaactgtca
tcttcaagtgaaataagcaaggagaagagtgacacagttgctgatatagagagtgaacca
gtggtagaaagcacagaaactgaggggacataa
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