Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112402089
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Entry
112402089 CDS
T08872
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nasi03009
]
112402089 (IGHMBP2)
03012 Translation factors [BR:
nasi03012
]
112402089 (IGHMBP2)
Enzymes [BR:
nasi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112402089 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
112402089 (IGHMBP2)
Ribosome biogenesis [BR:
nasi03009
]
Eukaryotic type
Other ribosome biogenesis factors
112402089 (IGHMBP2)
Translation factors [BR:
nasi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112402089 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
DEAD
ResIII
Viral_helicase1
nSTAND3
AAA_22
AAA_16
AAA_25
Helicase_RecD
IstB_IS21
SLFN-g3_helicase
UvrD-helicase
PhoH
Flavi_DEAD
SRP54
AAA
NPHP3_N
Zot
ABC_tran
ATPase
DAP3
DnaB_C
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
112402089
NCBI-ProteinID:
XP_024604457
UniProt:
A0A341BRY3
LinkDB
All DBs
Position
Unknown
AA seq
982 aa
AA seq
DB search
MASAAVESFVAKQLDLLELERDAEVEERRSWQENVSLKELQSRGVCLLKLQVSSQRTGLY
GRLLVTFEPRRCMSAAVLPSNSFISGDIVGLYEEDSQLATGILTRITQQLVTVAFDESHD
FQLSLDREHSYRLLKLANDITYKRLKKTLITLKKYHSGPAASLTEVLFGGSDPSPASEIP
SLTFYNATLDASQQEAVWFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGSKVLCCAP
SNIAVDNLVEQLAQWKQRLLRLGHPARLLESVQQHSLDAVLARGDGTRIVADIRKDMDQV
LAKSKETRNKREKSNFRNEIKVLRKELKEREEAAMLESLVAANVVLATNTGASSDGPLKL
LPDGHFDMVVIDECAQALEASCWIPLLKARKCVLAGDHRQLPPTIFSHKAALAGLSLSLM
ERLAEGHGARSVRMLSVQYRMHQAIARWASEALYHGQLTTHPSVAGHLLRDLPGVAATEE
TGVPLLLLDTAGCGLFELEDEDEQSKGNPGEVRLVSLHVQALVDAGVQAGDIAIITPYNL
QVDLLRQSLTHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAENRRVNVAVTR
ARRHVAVVCDSHTVSSHAFLKTLVDYFTEHGEVRTAFEYLDDIVPENYSREGAQGPGQAG
AKTRGSAATARRAPGSRQPTGAALGRKKPGTAPLSSKAQPQPSLNGGGREGGRSRGGAEQ
FGAVITEFIASEKTQLEFPASLDSQDRMWVHQIAEEYGLRHESAGEGKERFITVSKRVPA
APAAPATPAGPGSKAPLCPEPPSPAQTEPAIGEQSSQGQPDLKVLHLDRLQRAGSQLEQR
ATGSGPRKLPEKKKKKEAEGPMAIDLPAGEDFDALVSAAIKADNTCGLAKCTASVVTLGQ
LCQHCSRRYCLSHHLPETHGCGERARAHARQRISREGVPYAGSGTKDRSLDPAKRAQLQR
RLDKKLDQLTGQRRGKRKEKGK
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggcggctgtggagagcttcgtggccaagcagttggacctgctggagctcgag
agggacgcggaggtcgaggagcgcaggtcctggcaggaaaatgtctctctgaaagaactc
cagagccgaggcgtctgcttgctgaagctgcaggtatccagccagcggaccgggctgtac
ggacggttgctggtcacctttgagcccaggagatgcatgtctgcagctgtgcttcccagt
aacagctttatttccggtgacatagtgggtctgtatgaggaagacagtcagctggccact
gggatcctgacccggatcacccagcagttggtcaccgtggcctttgatgagtcccatgat
ttccagttgagtttggaccgagagcattcctacaggctgttaaaacttgccaacgacatc
acttataagcgactgaaaaaaactctgattaccctaaagaagtatcattctggccccgcc
gcctcgctcacagaggtcctcttcggcggatcagaccccagccctgccagtgagataccc
tcccttactttctacaacgccactctggacgcctcccagcaggaagcggtctggttcgcg
ctgtcccagaaggaactcgccatcatccatgggcctcccggcaccgggaagaccaccact
gtggttgaaatcattctccaagctgtgaaacagggctcaaaggttctgtgctgtgcccct
tctaacatcgccgtggacaacctggtcgagcagctggcccagtggaagcagaggctcctg
cgcctcgggcaccccgcacggctcctggagtctgtccagcaacattccctggacgcggtc
ttggcgcggggtgatggcacccggattgtggctgacatcaggaaggacatggaccaggtc
ttggcaaaaagcaaagagacccggaataaaagagagaaaagtaattttcgaaatgaaatc
aaggtgttaaggaaggagctgaaggagagggaggaagcagccatgctggagagcctggtg
gcggccaacgtggtcctcgcaacaaacacaggtgcgtcttcggacggccccttgaagctg
ctgccagacggccacttcgacatggtggtcattgacgagtgtgcccaggccctggaggcc
agctgctggatccccctgctgaaggccaggaaatgtgtcctggccggagaccacagacag
ctgccccccaccatcttctctcacaaggccgcactggcggggctgtcactgagcctgatg
gagcgcctggcggaagggcatggcgccaggtcggtacgcatgctgagcgtgcagtaccgc
atgcaccaggccatcgcgcgctgggcctcggaggccctgtaccatggacagctcacgacc
cacccttccgtggccgggcacctcctgcgggatctcccgggagtggctgccacggaggag
acgggcgtccccctgctgctgctggacacggccggctgtgggctgtttgagctggaggac
gaggatgagcagtctaaagggaaccctggtgaagtgcgccttgtcagtctgcacgtccag
gcgctggtggacgccggtgtccaggccggcgacatcgccatcatcacgccgtacaacctg
caggtggacctgctcagacagagcctcacgcacaggcacccggagctcgagattaagtct
gtcgacggcttccagggccgagagaaggaggctgtgatcctgtccttcgtcagatccaac
aggaaaggtgaggttggcttcctcgccgagaaccggcgcgtcaatgtggccgtcacccgc
gcccggcggcatgtggccgtggtctgcgattcccacaccgtcagcagccacgccttcctg
aagacgctggtggactacttcacagagcacggggaggtgcgcacagcctttgagtatctc
gacgacatcgtccctgaaaactactcccgtgagggtgcccagggccctggccaggccggc
gcgaagacccgcggctctgccgcgacggccaggagggctcccgggagcaggcagcccacg
ggggccgcgctgggtcggaagaagccgggcacggcgcctttgtcctccaaggcccagcct
cagcccagcctgaacggaggcggccgggaggggggcaggagcagaggtggcgcagagcaa
ttcggggctgtgataacggagttcatagcgagtgagaagacgcagctggagttccctgcc
tcgctggattcgcaagacaggatgtgggtccatcagatcgcggaagagtacgggctgagg
cacgaaagtgccggggaggggaaggaacggttcatcaccgtgagcaagagggtcccagcg
gcccctgcggctccagcaaccccggcagggcctggcagcaaagcccctctgtgtccagag
ccccccagccctgcgcagacagagcccgccatcggggagcagagcagccagggccagccg
gacctgaaggtgctgcacctggacagactgcagagggcggggagccagctggagcagcgg
gccacgggctccgggccgcggaagttaccagaaaagaaaaagaagaaagaagcagaagga
cccatggccatagacctgcccgccggggaggactttgacgccctggtctcggccgccatc
aaggctgacaacacttgcggcctcgccaagtgcacagccagcgtcgtaaccctgggccag
ctctgtcagcactgcagccgccgttactgcctcagccaccacctgcccgagacccacggc
tgtggggagagggctcgcgcccatgcgcggcagaggatcagccgggaaggggtcccctac
gccggcagcgggaccaaggacaggtccctggaccctgccaagagggcccagctgcagagg
aggctggacaagaagctggaccagctgaccggccagcggaggggcaagaggaaggagaag
gggaagtga
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