Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112402945
Help
Entry
112402945 CDS
T08872
Symbol
COL20A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
112402945 (COL20A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
VWA
Collagen
VWA_2
Pur_ac_phosph_N
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
112402945
NCBI-ProteinID:
XP_024605939
UniProt:
A0A341BUN4
LinkDB
All DBs
Position
Unknown
AA seq
1419 aa
AA seq
DB search
MVCQPGTKRHSGGPGGPALEAVFSWSKLPSAREPPALMRMALRLTGLRCAVLSGITSRGR
DAEGAVGRRRAADLLIQEAPPGLWDAGPWGQEGQWLEASRPHTMSIRVCPRLGVGLWLWL
GVTLGLGQGQASGRLRLVVLPEDRLQMKWRESEGSSLGYLVQVKPRAGDLEQEVMLTTKT
PKATVGGLSPSKGYTLQIFELTGSGNVLLAQREFVIKDLKSSSASRSSRRPLGAALQPSP
SHEGSPDLDPPVALAPSQDLPTPAGPQFRCTSPTPVDMIFLVDGSWSIGHSHFQQVKDFL
ASIIEPFEIGPDKVQVGLTQYSGDPQTEWDLNAFGTKEEVLAAVRGLQYRGGNTFTGLAL
THVLEQNLKPVAGLRPEAAKLVILVTDGKSQDDARTAGHVLKDLGVDVFAVGVKNADDAE
LRLLASQPLDITVHSVQDFRQLGSLAGLLSRLVCQKVQGRRLRSGPVTPAAAAPALDPLS
APTGLVLTRVTSSSIHLSWTPAPRPPLKYLIVLRPSKGGAPREVVVEAPASSAELHNLTS
STEYLVSVLPVYKAGVGEGLQGPVTTGASLGLPQVRVGQPEALLDGLAPGRDYEVWVRSL
RGAETSEAQSIRARTPALAPPRHLSFSDVSHDSARVSWEGTARPVRLFRVSYVSSKGGHS
GQTEAPGSATSVTLGPLLSSTVYTVRVTCLYPGGSSSTLTGRLTTRKVPSPSQLSVIELP
GDEVQLEWAAAAASGVLVYQITWTPLGEGKAHKISVPGNLGTAVLPGLGRHSEYEITILA
YYRDGARSDPVSLRYTPRRXTPALPQTLALASESPDSLRVSWTPPSGRVLHYQLSYALAS
GSGPEKSISIPGPRSHVTLPELLAATKYRVLVSAIYGAGKSVAVSATGRTACPALHPDGS
LPGFDLMAAFGLVEKEYASIRGVAMEPSAFGPIRTFTLFKDAQLTRRASDIHLATLPTEH
TVVFLLRLLPETPREVFALWQVAAEDFRPVLGVLLDASRKSLTYFRRDPSATLQEATFDL
PEVRRIFFGSFHKVHIAVGRSKVRLYVDCRKVAEKPTGEAGSLPTTGFVTLGRLAKARGP
RSSSASFQLQMLQIVCSDSWAEEDRCCELPASKDGETCPAFPSACACSSQTPGPPGPQGP
PGHPGRDGAPGEQGFPGPRGPPGVKGEKGDHGRPGLQGHPGLQGTPGKVGVQGPKGMRGL
EGTAGLPGPPGPRGFQGTAGARGSSGERGPPGAVGPTGLPGPKGERGEKGEPQSLATIYQ
LVGQASHLLKLHACTHESTRPPMPILEAPRAFGTRREARLPGEGGHGGPRPEDRGQHRPL
KKGKHCRLHPLVWHIPPSPPLGLEPSVGQAALGRSGERWGGGGSGKVVQDGPPAAPSEPE
RPPTGSQTPSAAGEEGLEAEGGEAEAGPGNRSSVHFLFR
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atggtctgccagcccgggaccaagaggcactcaggagggccaggaggccctgccctggag
gccgtgttcagctggagtaagttgccctctgcccgggagccccctgcgctgatgcgcatg
gccctgaggctgactggtctgagatgtgctgtgctctccggcatcacgtcccgagggcgg
gatgcagagggtgcggtgggcagacggagggcagctgacctcctgatccaggaagctccc
ccaggcctgtgggacgctggcccctggggacaggagggccagtggctggaggcctccagg
ccacacaccatgagcatccgtgtgtgcccccgcctcggggtcggcctctggctgtggctg
ggtgtcaccctgggactcggccagggacaagcaagcggccgcctgaggctggtggtgctg
cctgaggaccggctgcagatgaagtggagggagtcggaggggagcagcctcggctacctg
gtgcaggtgaagcccagggcaggggacctggagcaggaggtgatgctgactaccaagacc
cccaaggccacggtggggggcctgagcccctccaaagggtacaccttgcagatcttcgag
ctcacgggctcagggaatgtcctgctggctcagagggagtttgtgatcaaagatttgaag
agtagctctgctagcaggagcagccggaggccactgggggcagccctgcagcccagcccc
tcccacgaggggagcccagacctcgatcccccagtggccttggccccaagccaagacctg
cccacgcctgccggaccccagttccgctgcacgtcccccacacccgtggatatgatcttc
ctggtggatggatcctggagtattggtcacagtcacttccagcaggtcaaagacttcctg
gccagcatcattgagccctttgaaatcgggccagacaaagtccaagtaggcctgactcag
tacagcggggacccccagacagagtgggacctgaatgcctttggcaccaaggaggaggtg
ctggccgccgtgcgtggcctccagtacagagggggaaacacgttcacaggcctggccctg
acccacgtgctggaacagaacctgaagcccgtggcgggtctccgtccggaggcggccaag
ctggtgattctggtgacggacggcaagtcccaggacgacgcccgcactgctggccatgtg
ctcaaggatctgggcgtcgacgtctttgccgtgggcgtgaagaacgccgatgatgccgag
ctgaggctcctggcgtcccagcctctggacatcaccgtgcacagcgtgcaggacttccgc
cagctcggctcgctggccggcctgctcagccgcctcgtctgtcagaaggtgcagggcagg
cgcctgcgcagcggcccagttacaccggccgcagccgctccggccctggaccccctttcc
gctcccaccggcctggtcctgacccgggtgacctcctccagcatccacctgtcctggacc
ccagccccgcggccacccctcaagtacctgatcgtgttgcggccttctaagggcggcgcc
cccagggaggtggtggtggaggcgcccgcctcgtcggcagagctgcacaacctgacctcc
agcacggagtacctggtctccgtgctccccgtctacaaggccggcgtcggtgagggcctg
cagggcccggtgaccacaggggccagcctgggcctcccgcaggtgcgggtggggcagccg
gaggcgctgctggatgggctggccccaggcagggactacgaggtgtgggtgcggagcctg
cgaggggcagagaccagcgaggcccagagcatccgcgccaggacccccgccctggccccc
cccagacacctgagcttctcggacgtgagccatgactcggcccgagtgtcctgggagggc
accgcgaggcccgtgcgcctgttcagggtcagctacgtctcgagcaagggcggccactcg
ggacagacggaggctcctgggagcgccacctcggtcactctgggccccctcttgtcctcc
accgtctacacggtccgcgtcacctgcctctaccctgggggcagctcctccacactcact
ggccgcctgaccacacggaaagtccccagcccgagccagctgtcggtgatagagctgcct
ggggacgaagtccagctggagtgggcggccgcagcggcgtccggcgtgcttgtctaccag
atcacgtggacgcccctgggagaggggaaggcccataagatctccgttccggggaacctg
ggcacggccgtcctgcccggcctggggaggcactcggagtatgagatcaccatcctggcc
tactacagggatggggcccgcagtgaccccgtgtccctccgctacaccccccgtaggtga
acccctgctctgccccagacnctggccctggcctcagagtctcccgacagcctgcgggtc
agctggacgcccccgagtggccgtgtcctccactaccagctctcctatgcactggcctca
ggctcgggacccgagaagtcgatctccattccaggacccagaagccatgtgactctccct
gaactgctggcggccaccaagtaccgggtcctagtctcagccatctacggagcagggaag
agtgtggcagtgtctgccacgggccggacggcctgcccggccctccacccagatggctcc
ctcccaggctttgacctgatggcagccttcgggctggtggagaaggaatacgcctccatc
cgtggcgtggccatggagccctcggcctttggccccatcaggaccttcacgctcttcaag
gatgctcagctgacccgccgggccagcgacatccacctggccaccctccccacggaacac
acagtcgtcttcctcctgcgcctgctccccgagacgccccgcgaggtcttcgcgctgtgg
caggtggcggccgaagacttccggcccgtcctgggggtcctgctggacgccagcagaaag
tcgctgacctacttccgccgtgaccccagcgccaccctgcaggaggccaccttcgacctg
cccgaagtgaggaggatattctttgggagcttccacaaggtgcacatagccgtgggccgc
tccaaggtcaggctctatgtggactgccggaaggtggctgagaagcccactggggaggcc
ggcagcctgcccaccaccggcttcgtcacactggggagactggccaaggcccggggcccc
cggagcagctcagcctcgttccagctccagatgctacagattgtgtgcagtgactcctgg
gcagaggaggacaggtgctgcgagctcccggcttcgaaggatggagagacctgccctgcc
ttcccttctgcctgtgcctgttcctcgcagacccctgggcccccgggcccccaaggacct
cctggccaccctgggagggacggagccccaggagagcagggcttcccagggcccaggggt
ccaccaggggtcaaaggagagaagggggaccatggacgccccggcttgcagggccacccc
ggcctccagggcacccctgggaaggttggcgtccagggaccaaagggaatgagaggcctg
gaggggactgctggcctgcccggaccccctggccctaggggcttccagggcacggcgggg
gccagaggcagcagcggggagcgaggacccccgggggctgtggggcccacggggctgccg
gggcccaagggggagcgaggagagaagggcgagccacagtccttggccaccatctaccag
ctcgtgggccaggcctcgcacctgctgaagctccacgcctgcacccacgagagcacccgg
ccccccatgcccatcttggaggcccccagggccttcggcacgcgcagagaggcccggctt
cctggagaaggggggcacggtggcccccgcccagaggacagaggtcagcataggcccctc
aagaagggaaagcactgccgcctgcaccccttggtctggcacatccctccttcccctccg
ctgggcctggagccctcagtcggacaggcagccctgggccgcagtggggagcggtggggg
ggtgggggcagcgggaaagtcgtgcaggacggtccccctgctgccccgagtgagcccgaa
cgtccccccaccggatcccagacaccgagcgcagctggagaagagggtctggaggcagaa
gggggggaggcagaggccgggcccgggaaccgttcctccgtgcacttcctgttcagataa
DBGET
integrated database retrieval system
