Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112405251
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Entry
112405251 CDS
T08872
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi01524
Platinum drug resistance
nasi03430
Mismatch repair
nasi05200
Pathways in cancer
nasi05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
112405251 (MSH6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
112405251 (MSH6)
09162 Cancer: specific types
05210 Colorectal cancer
112405251 (MSH6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
112405251 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nasi03400
]
112405251 (MSH6)
DNA repair and recombination proteins [BR:
nasi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
112405251 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
WPP
Motif
Other DBs
NCBI-GeneID:
112405251
NCBI-ProteinID:
XP_024609370
UniProt:
A0A341C3F0
LinkDB
All DBs
Position
Unknown
AA seq
1361 aa
AA seq
DB search
MSRQSTLYSFFPKSPALNNASKDPVRASSESAAAAATGASPPSPGGDAAWSEAGPGPGPL
AGSTSRAEARNLNGGLRKSATPAVPASSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTF
IREKGKSARVHVQFFDDSPTRGWVSRRLLKPYTGSKSKEAQKGGHFYSSKPEILRAMQRA
DEALNKDKIKRLELAVCDEPSEPEEEEETEAGATYASDKSEEENEIESEEEVRPKVQGSR
RSSRQIKKRRVISDSESDIGGSDVEFKPDAKEEGSSDEISSGVGDSDSEGLDNPVKVAPK
RKRMITGNGSLKRKSSRKEMPSATKRATGISSETKNTLSAFSAPQNSESQAHVSGGCDDS
SRPTIWYHETLEWLKEEKRRDKHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQ
NFDLVIFYKVGKFYELYHMDALTGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYK
VARVEQTETPEMMEARCRKMAHISKYDRVVRREICRVITKGTQTYSVLEGDPSENYSKYL
LSLKEKEDDSSGHARVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKG
NLSVETKMILKGSLSSSLQEGLIPGSQFWDAAKTLRTLLEEGYFTDKLNEDSGVMLPQVL
KGMTSESDSVGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDMVRA
TGPGAVFAKASQRMVLDAVTLNNLEIFLNGTNGSTEGTLLDKIDTCYTPFGKRLLKQWLC
APLCNPYVISDRLDAIEDLMVVPDKISEVVDLLKKLPDLERLLSKIHNVGSPLKSQNHPD
SRAIMYEETTYSKKKIIDFLSALEGFKVLCKIIGVMEEVVDDFKSKILKQVLTLQAKNPE
GRFPDLTLELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQR
SRIGCRTIVYWGIGRNRYQLEIPENFITRNLPEEYELKSTKKGCKRYWTKTIEKKLANLI
NAEERRDVSLKDCMRRLFYNFDKNYKDWQAAVECIAVLDVLLCLANYSRGGDGPMCRPVI
LLPEEDTPPFLDLKGSRHPCITKTFFGDDFIPNDILIGCEEEEENGKAYCVLVTGPNMGG
KSTLMRQAGLLVVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETAS
ILKHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQN
VAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRK
AREFEKMTQSLRLFREVCLASERSTVDAEAVRKLLTLIEEL
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacaaagcacgctgtacagcttcttccccaagtctccagccctgaataatgcc
agcaaagacccggtcagggcctcaagtgaaagcgccgccgccgctgccaccggggcctct
cccccttccccaggcggggatgcggcctggagcgaggccgggcctgggccggggcccctg
gcgggctccacttcgcgggccgaggcgaggaacctcaacggagggctgcggaagtcggca
acccctgcggtccccgccagttcttgtgacttctcaccaggtgatttggtttgggccaag
atggagggttacccttggtggccttgcctggtttacaaccacccttttgatggaacattc
atccgtgagaaaggaaagtctgcccgagttcatgtacagttttttgatgacagcccaaca
aggggctgggttagcagaaggctattaaagccatatacaggttcgaagtcaaaggaagcc
cagaaaggaggtcatttctacagttcaaagcctgaaatactcagagcaatgcaacgtgca
gatgaagccttgaataaagacaagattaagaggcttgaattggcagtgtgtgatgagccc
tcagaaccagaggaggaagaagagacggaggcaggtgccacttacgcatcagataagagt
gaagaagaaaatgaaattgagagtgaagaggaagtgaggccaaaggtgcaaggatctagg
cgaagtagccgccagataaaaaagcgaagggtcatatcagactctgagagtgacattggt
ggctctgatgtggaatttaagccagatgctaaggaggaaggaagcagtgatgaaataagc
agtggagtaggggatagtgacagtgaaggcctggacaaccctgttaaagttgctccgaag
aggaagagaatgataactggtaatggctccctcaaaaggaaaagttcaaggaaggaaatg
ccctcggccaccaaacgagcaactggcatttcatcagaaaccaagaatactttgagtgct
ttctctgcccctcaaaattctgaatcccaagcccacgttagtggaggatgtgatgacagt
agtcgccctaccatctggtatcatgaaactttagagtggcttaaggaggagaagagaaga
gataagcacaggaggcgacctgatcaccctgattttgatgcatccacactctatgtgcct
gaggatttccttaattcctgtactcctgggatgagaaagtggtggcagattaagtctcag
aactttgatcttgtcatattttataaggtggggaagttttatgagctctaccacatggat
gctcttactggagtcagtgaactagggctggtattcatgaaaggcaactgggcccattct
ggtttccctgaaattgcatttggccgatattcagattccctggtccagaagggctataaa
gtagcacgggtggaacagaccgagaccccggaaatgatggaggcacgatgccgtaagatg
gcacatatatctaagtatgatagagtggtgaggagggagatctgtagggtcattaccaag
ggtacacagacctacagtgtgctggaaggtgacccctcggagaactacagtaaatacctt
cttagcctcaaagaaaaagaagatgattcttctggccacgctcgagtgtatggagtatgt
tttgttgatacctcgctagggaagttcttcataggtcagttttcagatgatcgccattgt
tccaggtttaggacgttagtggcacactatcctccagtacaagtgttgtttgagaaagga
aatctctcagtggaaactaagatgattctcaagggttcattgtcctcttctcttcaggaa
ggtctgataccaggttcccagttttgggatgcagccaaaactttgagaactctccttgaa
gaagggtattttacagacaagttaaatgaggacagtggggtgatgttaccccaggtgctt
aaaggtatgacctcagagtctgattctgttgggttgacaccgggagagaagagtgaattg
gccctctctgctcttggtggttgtgtcttctacctcaaaaaatgccttattgatcaggag
cttttatcaatggctaattttgaagaatatattcccttggattctgacatggtccgtgct
acaggacctggtgctgtatttgctaaagccagtcaacgaatggtgctagatgctgtgaca
ttaaacaacttggagatttttctgaatggaacaaatggttctactgaagggaccctgtta
gacaagattgatacttgctatactcccttcggtaagcggctcctaaagcaatggctttgt
gccccactctgtaacccttatgttatcagtgatcgtctagatgccatagaagacctaatg
gttgtgcctgacaaaatctctgaggttgtagaccttctaaagaagcttccagaccttgag
aggctactgagtaaaattcataatgttggctctcccctgaagagccagaaccacccagat
agcagggctataatgtatgaagaaaccacatacagcaaaaaaaagattattgattttctt
tctgctctggaaggattcaaagtactatgtaaaattataggggttatggaggaagtcgtt
gatgactttaagtctaaaatccttaagcaggtccttactctgcaggcaaaaaatcctgaa
ggccgctttcctgatttgactttagaactaaaccgatgggatacagcctttgaccatgaa
aaggctcgaaagactggactgattactcccaaggcaggatttgactctgattatgatcaa
gctcttgctgacataagagaaaatgaacagagcctcctggaatacttggagaaacagcgt
agtagaattggctgtaggaccatagtctactggggaattggtaggaatcgctaccagttg
gaaattcccgagaatttcatcacccgtaatttgccagaagaatatgagttgaaatctacc
aagaagggctgtaaacgatactggaccaaaacaattgagaaaaagttggctaatctgata
aatgctgaagaacggagagatgtatcattaaaggactgcatgcggcgactgttctataac
tttgataaaaattacaaggactggcaggctgctgtggagtgcatcgcagtgttggatgtc
ttactgtgcctggccaactacagtcgagggggtgatggtcctatgtgtcgtccagtaatt
ctgttgccagaagaagatactcctccctttctagaccttaaaggatcacgccacccctgc
attacgaagactttttttggtgatgactttattccaaatgacattctaataggctgtgag
gaagaggaagaaaatggcaaagcttactgtgtgcttgttactggaccgaatatggggggc
aagtctacgctcatgagacaggccggcctactggttgtaatggcccagatgggttgctat
gtaccagctgaagtgtgtaggctcacaccaatcgacagagtgtttactagacttggtgcc
tcagacagaataatgtcaggcgaaagtacattttttgttgaattgagtgaaactgccagt
atacttaaacatgcaacagcacattctctggtgcttgtggatgaattaggaagaggtact
gcaacatttgatgggacagcaatagcaaatgcagttgttaaagaacttgctgagaatata
aagtgtcgtacattgttttctacccactaccattcattagttgaagactattctcaaaat
gttgcagtgcgcctaggacacatggcatgcatggtagaaaatgaatgtgaagatcccagc
caggagactattaccttcctgtataaattcattaaaggagcctgtcctaaaagctatggc
tttaatgcagcaaggcttgctaatcttccagaggaggttattcaaaagggacatagaaaa
gcaagagaatttgagaagatgactcagtcactgcgattatttcgggaagtttgtctggct
agtgaaaggtcgactgtagatgctgaagctgtccgtaagttgctgactttgattgaggaa
ttatag
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