Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112405258
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Entry
112405258 CDS
T08872
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi01524
Platinum drug resistance
nasi03430
Mismatch repair
nasi05200
Pathways in cancer
nasi05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
112405258 (MSH2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
112405258 (MSH2)
09162 Cancer: specific types
05210 Colorectal cancer
112405258 (MSH2)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
112405258 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nasi03400
]
112405258 (MSH2)
DNA repair and recombination proteins [BR:
nasi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
112405258 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
112405258
NCBI-ProteinID:
XP_024609382
UniProt:
A0A341C626
LinkDB
All DBs
Position
Unknown
AA seq
934 aa
AA seq
DB search
MAVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHREDALLAAREVFKT
QGVVKYMGPAGAKTVESVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLA
FKASPGNLAQFEDILFGNNDMSASIGVVGVKMSTVDGQRQIGVGYVDSIQRKLGLCEFPD
NDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQVIQRGGILITERKRADFSTKDIYQD
LNRLLKGKKGEQVNSAVLPEMENQVAVSSLCAVIKFLELLSDDSNFGQFELTTFDFSQYM
KLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERL
NLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQA
LEKYEGKHQALLLAVFVTPLIDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSE
LREIMDDLEKKMQSTLISAARELGLDPGKQIKLDSNTQFGYYFRVTCKEEKVLRNNKNFS
TVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLA
QLDAVVSFAHVSNGAPVPYVRPVILEKGQGRIILKASRHACVEVQDEVAFIPNDVHFEKD
KQVFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLK
GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATRIRAFCMF
ATHFHELTALASQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHV
IECAKQKALELEEFQNIGKPQECDEMEPAAKRCYLEREQGEKIIQEFLSKVKQVPFTEMS
EENIVMKLKQLKAEVIAKNNRFVNEIISRIKVTT
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaaagagacgctgcagctggagagcgcggccgaggtcggcttcgtg
cgcttcttccagggcatgccggagaagccgaccaccacggtgcgcctcttcgaccggggc
gacttctatacggcgcaccgggaggacgcgctgctggccgcccgggaggtgttcaagacc
cagggggtggtcaagtacatgggaccggcaggagcaaagactgtggagagtgttgtactt
agtaaaatgaattttgagtcttttgtaaaagatcttcttctagttcgtcagtacagagtt
gaagtttataagaacagagctggaaataaggcctccaaggagaatgattggtatttggca
tttaaggcttctccaggtaatcttgctcagtttgaagacattctctttggtaacaacgat
atgtcagcttccattggtgttgtgggtgttaaaatgtctacagttgatggccaaagacag
attggagttgggtatgttgactccatacagaggaagctaggactgtgtgagtttcctgat
aatgatcaattctccaatctggaggctctcctgattcagattggaccaaaggaatgtgtt
ttaccaggaggagagactgctggagacatgggaaaactgaggcaggttattcagagagga
ggaattctgatcacagaaagaaaaagagctgacttttccacaaaagatatttatcaggac
ctcaaccggttgttgaaaggcaaaaagggagaacaggtgaatagtgctgtgttgccagaa
atggagaatcaggttgcagtttcttcattgtgtgcagtaatcaagtttctagaactctta
tcagatgattcaaactttggacagtttgaactgactacttttgacttcagccagtacatg
aaattggatattgcagcagtcagagcccttaaccttttccagggttctgttgaagatact
actggctctcagtctctggctgcattgctgaataaatgcaaaacccctcaaggacaaaga
ctggttaaccaatggattaagcagcctctcatggacaagaacagaatagaagagagatta
aatttagtcgaagcttttgtagaagatgcagaattgaggcagagtttacaagaagattta
cttcgtcgatttccagatcttaacagacttgccaagaaatttcaaagacaagcagcaaac
ttacaagattgttatcgactctatcagggtataaatcaactccctaatgttattcaggct
ctggaaaaatatgaaggaaaacatcaggcattgttgttggcagtttttgtgactcctctt
attgatcttcgttctgatttctccaagtttcaggaaatgatagaaacaactttagatatg
gatcaggtggaaaaccatgaattccttgtaaaaccttcatttgatcctaacttgagtgaa
ttaagagaaataatggatgacttagaaaagaagatgcagtcaacattaataagtgcagct
agagaactaggcttggatcctggcaaacagattaaactggattccaacacacaatttgga
tattattttcgcgtaacatgcaaggaagaaaaagtccttcgtaataataaaaatttcagt
acagtagatatccagaagaacggtgttaaatttacgaacagtaaattgacttctctcaat
gaagagtataccaaaaataaaaccgaatatgaggaagcccaggatgccattgttaaggaa
attgtcaatatttcttcaggctatgtagaaccgatgcagacactaaatgatgtgttagct
cagctagatgctgttgttagctttgctcacgtgtccaatggagcacctgttccatatgta
cggccggtcattttggagaaaggacaagggagaattatactgaaagcatccagacatgct
tgtgttgaagttcaagatgaagttgcatttattcctaatgatgttcactttgaaaaagat
aaacaggtgttccacatcattactggtcccaacatgggaggtaaatcaacatatattcgc
cagactggcgtggtagttctcatggcccagattgggtgttttgtgccatgtgagtcagca
gaagtgtccatcgtggactgcatcttggcccgggtaggggctggtgacagtcagttgaaa
ggagtctccacattcatggctgaaatgttagaaactgcttctattctcaggtctgcaacc
aaagattctttaataatcatagatgaattgggaagaggaacctctacctatgacggattt
gggttagcgtgggctatatcagagtacattgcaacaaggatccgtgctttttgcatgttt
gcaacccattttcatgaacttactgccttggccagtcagataccaactgttaataatcta
catgtcacagcactaactactgaagagaccttaactatgctttatcaggtgaagaaaggt
gtctgtgatcagagttttgggattcacgttgctgagcttgctaatttccccaggcatgta
atagagtgtgctaaacaaaaagccctggaactagaggagtttcagaatattgggaagcca
caggaatgtgatgaaatggaaccagcagcaaagaggtgctatctggaaagagagcaaggt
gaaaaaattattcaagagtttttatccaaggtgaagcaagtgccctttactgaaatgtca
gaagaaaacatcgtaatgaagttaaaacagctgaaagctgaggtgatagcaaagaataat
cgttttgtaaatgaaataatttcaagaataaaggtaactacatga
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