Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112405565
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Entry
112405565 CDS
T08872
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi04151
PI3K-Akt signaling pathway
nasi04382
Cornified envelope formation
nasi04510
Focal adhesion
nasi04512
ECM-receptor interaction
nasi04518
Integrin signaling
nasi04820
Cytoskeleton in muscle cells
nasi04926
Relaxin signaling pathway
nasi04933
AGE-RAGE signaling pathway in diabetic complications
nasi04974
Protein digestion and absorption
nasi05146
Amoebiasis
nasi05165
Human papillomavirus infection
nasi05200
Pathways in cancer
nasi05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
112405565 (COL4A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112405565 (COL4A1)
04518 Integrin signaling
112405565 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112405565 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
112405565 (COL4A1)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
112405565 (COL4A1)
09154 Digestive system
04974 Protein digestion and absorption
112405565 (COL4A1)
09158 Development and regeneration
04382 Cornified envelope formation
112405565 (COL4A1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
112405565 (COL4A1)
09162 Cancer: specific types
05222 Small cell lung cancer
112405565 (COL4A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
112405565 (COL4A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
112405565 (COL4A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
112405565 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nasi04147
]
112405565 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
nasi00536
]
112405565 (COL4A1)
Exosome [BR:
nasi04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
112405565 (COL4A1)
Glycosaminoglycan binding proteins [BR:
nasi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112405565 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
112405565
NCBI-ProteinID:
XP_024609791
UniProt:
A0A341C4Q8
LinkDB
All DBs
Position
Unknown
AA seq
1730 aa
AA seq
DB search
MDSSAFVLQASESAAPGAPAQFPSPGSVSTRMVYFYKMDQKTYNFLTFGIFRHIPHFQVE
TVFMTNFVSPDCLKLLNQKCDIFVALKIGGVCAGSGCGKCDCHGVKGQKGERGLPGLQGV
IGFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGASGYPGNPGLPGIPGQDGPPGP
PGIPGCNGTKGERGPLGPPGLPGFAGNPGPPGLPGMKGDPGEILGHIPGTLLKGERGFPG
PPGTPGSPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGLSFQGPKGDKGDQGVSGP
PGVPGQAQVREKGEYAAKGEKGQKGEPGFQGMPGVGEKGEPGKPGPRGKPGKDGEKGEKG
GLGFPGDSGYPGLPGREGLKGDKGEAGPPGPPGIVIGTGPLGEKGERGYPGVPGLKGEPG
PKGFPGIQGPPGSPGFPVPGLSGPPGLPGERGEKGDQGLPGVSLPGPGGRDGLPGPPGPP
GPPGQPGHTNGIVECQPGPPGDQGPPGSVGQPGLTGEVGEKGQKGDSCLVCDSTGLRGPP
GPQGPPGEIGFPGQPGAKGDRGLPGRDGLEGLPGPQGVPGLMGQPGAKGEPGEIYFDIRL
KGDKGDPGFPGQPGMPGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGD
VGPPGPPGFGPIGPIGDKGQMGFPGNPGSPGLPGPKGEEGKVMPLPGPPGATGLPGSPGF
QGPQGDRGFPGTPGRPGLSGEKGSVGQPGIGFPGPPGPKGVDGLPGDTGPPGNPGRQGFN
GLPGNPGPPGQKGEPGVGLPGLKGLPGLPGIPGTPGEKGNVGGPGVPGEHGAIGPAGLQG
IRGDPGPPGLQGPKGASGVPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMP
GPKGDKGPQGLPGLTGQSGLPGLPGQQGTPGQPGFPGPKGEMGVMGTPGQPGSPGPAGVP
GLPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQI
GPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLP
GIPGEKGVPGLPGLQGIPGSPGEKGAKGEKGQAGLPGIGIPGRPGEKGDQGVAGFPGSPG
EKGEKGSSGIPGMPGSPGPKGSPGSVGYPGSPGLPGEKGDKGLPGLDGVPGIKGEAGLPG
TPGLTGPAGQKGEPGSDGFPGSAGEKGEPGLPGRGFPGFPGAKGEKGSKGDVGFPGLAGS
PGIPGSKGEQGFMGPPGPQGQPGLPGTPGHAVEGRKGDRGPQGQPGLPGLPGPVGPPGLP
GLDGLKGDKGNPGWPGTPGAPGPKGDPGFQGMPGVGGSPGATGAKGDMGPPGVPGFQGQK
GLPGLQGVKGDQGDQGFPGTKGLPGPPGPPGPYDIIKGEPGLPGPEGPAGLKGLQGPPGP
KGQQGVTGSVGLPGPPGIPGFDGAPGQKGEAGPFGPPGPRGFPGPPGPDGLPGSMGPPGT
PSVDHGFLVTRHSQTIDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFST
MPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGEGIRPFISRCAVCEAPAMVMA
VHSQTIQIPQCPSGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGR
GTCNYYANAYSFWLATXXXXXXFRKPTPSTLKAGELRTHVSRCQVCMRRT
NT seq
5193 nt
NT seq
+upstream
nt +downstream
nt
atggactcgtccgcatttgtccttcaggccagtgagtcagcagcccccggggcccccgcc
cagttcccgtctccaggcagcgtttccacccggatggtctacttctataagatggaccaa
aagacctacaactttttgacctttgggatctttcgccacatcccccatttccaagtggag
actgtcttcatgaccaacttcgtcagtcctgactgtctgaaactcctgaatcagaagtgc
gatattttcgtagccttgaagataggaggtgtgtgtgctggctctggctgtgggaaatgc
gactgccatggcgtaaagggacagaagggagaaagaggtctcccagggttacaaggtgtc
atcgggttcccgggaatgcaaggacctgaggggccgcagggaccaccaggacagaagggt
gacaccggagaaccaggactgccgggaactaaagggacaagaggacccccaggagcatct
ggttaccctggaaacccaggacttcctggtattcctggccaagatggtcctccgggtccc
ccaggtatcccaggatgcaacgggacgaagggtgagagagggcctctggggcctccgggt
ttgcctggattcgctggaaatcccgggccgccagggttgccgggaatgaagggggatcca
ggtgaaatacttggccatataccaggaaccctgttgaaaggtgaaagaggatttcctgga
cccccaggaacacctggttcgccaggactgccagggctgcaaggtcctgttggccccccg
ggattcactggaccaccaggtcccccaggccctcctggccctccaggtgaaaaggggcaa
atgggcttgagttttcaagggccaaaaggtgacaagggtgatcaaggggtcagtgggccc
ccaggagtcccaggacaagctcaagttcgagagaaaggagagtatgctgcaaaaggagag
aagggccagaaaggtgaacctggatttcaggggatgccaggggttggagagaaaggtgaa
cccggaaaaccaggaccccgaggaaaaccgggaaaagatggtgaaaaaggagaaaaaggg
ggtctggggtttccaggggattcggggtacccaggactcccaggccgagagggtttaaag
ggagacaaaggtgaagccggccctcctggcccacctggaattgtgatcggcacagggccc
ttgggagagaaaggagagcgggggtacccaggggttccagggttgaaaggggagccgggc
cccaaaggtttcccaggaatacaaggcccgccgggctctccaggcttcccggtaccaggg
ctgagtggtccccccggcctccccggtgaaagaggagagaaaggcgaccagggcttgcca
ggcgtgtccttgcccggaccaggtggaagggatgggctaccgggcccccctggacccccc
ggcccccctgggcagccaggccacacaaatggaattgtggaatgccagcccgggccgcca
ggtgaccagggtcctcccggaagtgtggggcagccgggattgacaggcgaagttggagaa
aaaggtcaaaaaggagatagttgtctcgtctgtgactcaacaggacttcgtgggccccca
gggccacagggaccccccggagaaataggtttcccaggacagccaggggccaagggcgac
agaggtttacccggcagggatggtcttgaaggattgcctggaccgcaaggtgtgccaggg
ctgatgggccagccaggagccaagggcgagcctggcgagatttacttcgatattcgactc
aagggcgacaaaggagacccaggtttcccaggccagcccgggatgccagggagagcaggc
tctcccggaagagacggccatccgggtctgcccggccccaaaggctccccgggttcagta
ggattaaaaggagaacgtggccccccgggaggagttggattccccggcagccgtggtgac
gtcggccctcctgggcctccagggtttggccctattggccccattggtgacaaaggacag
atgggctttccgggaaaccccgggtccccaggcctgccaggtcccaagggtgaagaagga
aaggtcatgcccttacccggtccccctggagcaacaggacttccggggtcccccgggttc
caagggccccaaggtgaccgaggttttcctggaaccccgggaaggccgggtctctctgga
gagaagggttcagtcggccagcctgggattggctttccagggcctcccggccccaaaggt
gttgacggcttacctggagacactggacctcctggaaatcccggtcgccaaggtttcaat
ggcttacctggcaacccaggtccgcctggccaaaagggcgagcctggagttggtctgccg
ggactcaaaggtctgccaggactccctggcatccccggcacccctggagagaagggaaac
gtcgggggaccaggcgttcctggagagcacggcgccatcggccctgcaggccttcaggga
atcagaggtgacccgggacctcctggattgcaaggccccaaaggagcttctggagtcccc
ggaataggccctcctggagctatgggaccccctggaggacagggacccccagggtcatca
ggcccccctggagtgaaaggagagaagggcttccccggattcccaggcctggatatgcca
ggccccaaaggagacaaagggcctcaggggctccccggcctgacaggacagtcgggactg
cctggtctccctggacagcagggcacacctggacagcccgggttcccaggtcccaaggga
gagatgggcgtcatggggacccccgggcagcccggctcgccaggaccagcgggtgtgcca
ggattgccgggtgaaaaaggggaccacggcttcccgggcagctcgggacccaggggagac
cctggcttcaagggtgataaaggagatgtgggtcttcctggcaagccgggctccatggat
aaagtggacatgggcagcatgaaaggccagaagggagaccaaggagaaaaaggacaaatc
ggcccaactggtgataaaggatcccggggagatcctggaaccccaggagtgcctggaaag
gacggccaggcaggacaccctgggcagccaggacctaaaggtgatccgggcataagtggg
accccaggtgctccgggacttcctggacccaaaggatcggttggtggaatgggcctgcca
ggaatacctggagaaaaaggtgtgcctggcctccctggcctgcagggcatccctggctca
cctggagaaaagggagcaaaaggagagaaagggcaggcaggtctacctggcattgggatt
ccaggacggcccggggagaagggagaccaaggggtagcaggttttccaggaagccctgga
gagaagggagagaaaggaagcagtgggatcccagggatgcccgggtctccgggccccaaa
ggctcaccagggagtgttggctatccaggaagccctgggttgcctggagaaaaaggtgac
aaaggcctcccgggattggatggcgtccctggcatcaaaggagaagcaggtcttcctggg
acgcctggtctcacgggcccggccggccagaaaggggagcccggcagtgatggattccca
gggtcggcaggagagaagggtgaaccaggtctaccgggaagaggattcccagggtttcca
ggggccaaaggagagaaaggttcaaagggtgacgtgggtttcccaggcttagctgggagc
ccaggaattcctggatccaaaggagaacaaggattcatgggtcctccggggccacaggga
cagccgggattgccaggcaccccgggccacgcggtggaggggcgcaaaggagaccggggc
ccacagggccaacctggcctgccagggcttccgggacccgtggggcctccagggctccct
gggcttgatgggctgaaaggtgacaagggaaacccaggctggccgggcactcctggggct
ccagggcccaagggagacccaggattccagggcatgccgggggtcggtggctctccagga
gctacaggtgctaagggtgatatgggacctccaggagttccagggtttcaagggcagaaa
ggcctccctggccttcagggagttaaaggtgaccaaggagaccaaggtttccctggaact
aaaggtcttcctggtcccccgggccccccgggtccatacgacatcatcaaaggggagcca
gggctccctggtcctgagggccccgcaggtctgaaagggcttcagggacctccaggcccc
aaaggacaacaaggtgtgacaggatctgtgggcttacctgggccaccaggtattcccggg
tttgatggggcccctggccagaaaggagaggcaggaccctttggacctcctggtccaaga
ggcttcccgggtccacccggccctgatgggttgccgggatccatgggtcccccgggtacc
ccgtctgttgatcacggcttcctcgtgaccaggcacagtcagacaatagacgacccccag
tgtcctcctgggaccaaaatcctctaccatgggtactctctgctctacgtacaaggcaat
gagcgggcgcacggccaggacctgggcacggcgggcagctgtctgcgcaagttcagcacg
atgcccttcctcttctgtaacatcaacaacgtctgcaacttcgcctcccgaaatgattac
tcgtactggctgtccaccccggagcctatgcccatgtccatggcgcccatcaccggggag
gggatcaggcccttcatcagcaggtgtgctgtgtgtgaggctccggccatggtcatggct
gtgcacagccaaacgatccagatcccgcagtgccccagcggctggtcctcgctctggatt
ggctactcctttgtgatgcacaccagcgccggagcggaaggttctggccaagccctggcc
tcccctgggtcctgtctggaagagttcagaagcgccccattcatcgagtgccacggccgc
gggacttgcaattactatgcaaacgcttacagcttttggcttgctacgnnnnnnnnnnnn
nnnnctttcaggaagcccacgccgtccaccttgaaggctggagagctgcgcacgcatgtc
agtcgctgtcaagtgtgcatgcggagaacataa
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