KEGG T08872: 112406574

Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112406574

Entry

112406574         CDS       T08872

Symbol

HMGB1

Name

(RefSeq) high mobility group protein B1

K10802

high mobility group protein B1

Organism

nasi Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)

Pathway

nasi03410

Base excision repair

nasi04140

Autophagy - animal

nasi04217

Necroptosis

nasi04613

Neutrophil extracellular trap formation

Brite

KEGG Orthology (KO) [BR:nasi00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    112406574 (HMGB1)
09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    112406574 (HMGB1)
  09143 Cell growth and death
   04217 Necroptosis
    112406574 (HMGB1)
09150 Organismal Systems
  09151 Immune system
   04613 Neutrophil extracellular trap formation
    112406574 (HMGB1)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:nasi03036]
    112406574 (HMGB1)
   03400 DNA repair and recombination proteins [BR:nasi03400]
    112406574 (HMGB1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:nasi04147]
    112406574 (HMGB1)
Chromosome and associated proteins [BR:nasi03036]
Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    112406574 (HMGB1)
DNA repair and recombination proteins [BR:nasi03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     112406574 (HMGB1)
   MMR (mismatch excision repair)
    Other MMR factors
     112406574 (HMGB1)
Exosome [BR:nasi04147]
Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   112406574 (HMGB1)

SSDB

Motif

Pfam:

HMG_box_2 HMG_box HMG_WDHD1 NOA36 HMG_box_5 Nop14

Other DBs

NCBI-GeneID:

112406574

NCBI-ProteinID:

XP_024611233

UniProt:

A0A341CA16

LinkDB

Position

Unknown

AA seq 215 aa
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
SKKKKEEEEDEEDEEDEEEEEDEEDEEEEEDDDDE

NT seq 648 nt +upstreamnt +downstreamnt
atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattctttgtg
caaacttgccgggaggagcacaagaagaagcacccagatgcttctgtcaacttctcagag
ttttctaagaagtgctcagagaggtggaagaccatgtctgctaaagagaaaggaaagttt
gaagacatggcaaaggcggacaaggcccgttatgaaagagaaatgaaaacttatatccct
cctaaaggggagacaaaaaagaagttcaaggatcccaatgcacccaagaggcctccttcg
gcctttttcttgttttgttctgagtatcgtccaaaaatcaaaggagaacatcctggccta
tccattggtgatgttgcaaagaaactgggagagatgtggaataacactgctgcagatgac
aagcagccctacgagaagaaggctgctaaactgaaggaaaagtacgaaaaggatattgct
gcataccgagctaaagggaagcctgatgcagcaaaaaagggagtcgtcaaggctgaaaaa
agcaagaaaaagaaggaagaggaggaagatgaggaagatgaagaggatgaggaggaggag
gaggatgaagaggatgaagaggaagaagaagatgatgatgatgaataa

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