Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112408117
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Entry
112408117 CDS
T08872
Symbol
BRIP1
Name
(RefSeq) Fanconi anemia group J protein
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi03440
Homologous recombination
nasi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112408117 (BRIP1)
03460 Fanconi anemia pathway
112408117 (BRIP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nasi03400
]
112408117 (BRIP1)
Enzymes [BR:
nasi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112408117 (BRIP1)
DNA repair and recombination proteins [BR:
nasi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
112408117 (BRIP1)
FA (Fanconi anemia) pathway
Downstream FA components
112408117 (BRIP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
ResIII
ARCH_RTEL1
DUF6399
Motif
Other DBs
NCBI-GeneID:
112408117
NCBI-ProteinID:
XP_024613447
UniProt:
A0A341CHP1
LinkDB
All DBs
Position
Unknown
AA seq
1186 aa
AA seq
DB search
MMSSVCSEYTIGGVKINFPCKAYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCS
ALAWQQSLSGKPVNEGLSKKAEVPLSCCCTCHSKNFTNNDVNQGTSHHFNSPSIPTSERN
GTLSTCQDSPEKTTLAAKLSAKKQASRYRDENDDFQVEKKRIRPLETTQQIRKRHCFEKE
VHHLDAKVASGKTTKLNSPLGKINSFSPQNPPGNCSRCCCSTKQGDSQDSSNTTKKDHGG
KSKIPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPEVVGNFNRNEKCM
ELLDGKNGKFCYFYHGVHKISDQHILQTLQGMCKAWDIEEFVSLGKKLKACPYYTARELM
QEADIIFCPYNYLLDAQIRESMDINLKEQVVILDEAHNIEDCARESASYSITEVQLRFAR
DELDSMVNNNIRKKDHEPLRAVCYSLINWLEANSEHLVERGYESSCKVWSGSDMLLNLHK
MGITTATFPILQGHFSAILQKEEKVSSVHGKEEAREVPIISASTQIMLKGLFMVLDYLFR
QNSRFADDYKVAIQQTYSWINQTDTSDKNGFLVLPKNKKRLRQKAAVHVLNFWCLNPAVA
FSDINGKVWTIVLTSGTLSPMKSFSSELGVTFTIQLEANHVINNSQVWVGTIGSGPKGRS
LCATYQHTETFEFQDEVGALVLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGVWHNLEL
VKTVIVEPQRGEKTDFDELLQMYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAV
ITIGIPFPNVKDLQVELKRQYNDQHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHRNDW
GALILVDDRFRSNPSRYISGLSKWVRQLIQHHSTFESALESLAEFSKKHRKVIDVYKEDR
KSIQDNESPLAVACLKDNTSTYLLEAASHLSPEYPREDDPLLLEESTQAVGAEKIVISRS
TSPTFNKQTNRVSWSGSNFLEQYLTGKILTGTPKFRSSEDCASNSSTFKTEKGCEAVLPL
TDKYESSSLTVNTSLGPCPQSETVVPSIKINATLLNPEDPDILLSLVSEEAELSTSNTAF
ETEAEDESIYFTPELYDPIDTNEEKNELVGTDRDNRLANNSNCILAEDLFEIKTMKGMDS
VREMKAEDCTGTKLNRLTHIKESKVDDIGSNVKMTHINELELGKNS
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcttcagtatgttctgagtatacaattggtggggtgaagattaactttccttgt
aaagcttatccatcacagcttgctatgatgaattctattgtcagaggattaaatagtaag
cagcattgtttgttggagagccccacagggagtgggaaaagcttagccttactttgctct
gctttagcgtggcagcaatctcttagtgggaagccagtgaacgaaggcttaagtaaaaaa
gctgaagtaccattgtcgtgttgttgtacatgccattcaaagaattttacaaacaatgat
gtgaaccagggaacttcacatcatttcaacagtccaagtataccaacttctgaaagaaat
ggcactttgtcaacttgtcaagactctcctgaaaaaactacactggctgcaaagctatct
gctaagaaacaggcatccaggtacagagatgaaaatgatgattttcaagtagagaagaaa
agaattcgacccttagaaactacacagcagattagaaaacgtcattgttttgaaaaggag
gtgcaccatttggatgcaaaagttgcttcaggaaagaccacaaaactcaactccccatta
ggaaagataaactccttttctccacaaaatccccctggtaactgttctaggtgctgttgt
tctactaaacaaggagacagtcaagattcttcaaataccactaagaaggatcatgggggg
aagtccaagatacccaaaatatattttgggacacgcacacacaagcagattgctcagatt
actagagagctccggaggacagcatactcaggggtcccaatgactattctttccagcagg
gatcacacttgtgtccatcctgaagtagtaggtaacttcaacagaaatgaaaagtgcatg
gaattgctagatggaaaaaatggaaaattctgctatttttatcatggtgttcataaaatt
agtgatcaacacatattacagactctccaagggatgtgcaaggcctgggatatagaagaa
ttcgtcagcttggggaaaaaactaaaggcatgtccatattacacagcacgagaactaatg
caggaggctgacataatattttgtccctacaactatcttctagatgcacaaataagggaa
agtatggatatcaatctgaaagaacaggttgtcattttagatgaagctcataacattgag
gactgtgctcgggaatcagcaagttacagtataacggaagttcagcttcggtttgctcgg
gatgaactagatagtatggttaacaataatataaggaagaaagaccatgaacccctacga
gctgtgtgctatagcctcattaattggttagaagcaaactctgaacatcttgtggaaagg
ggttatgaatcatcctgtaaagtgtggagtggaagtgacatgctcttaaatttacacaaa
atgggcataaccactgctacttttcctattttgcagggacatttttctgctatccttcaa
aaagaagaaaaggtctcatcagttcatggtaaagaggaggcaagagaagtacctattatt
agtgcttcaactcaaataatgctcaaaggactttttatggtgcttgactatctttttagg
caaaatagcagatttgcagatgattataaagtcgctattcaacagacttactcttggata
aatcagactgatacttcagataaaaatgggttcttggttctaccaaaaaataagaaacgt
ttacgacagaaagcagcagttcatgtgctgaatttttggtgcttaaatccagctgtggcc
ttttcagatattaatggcaaggtttggacgattgttttgacatctgggacattatcacca
atgaaatccttttcatcagaacttggtgttacatttactatccaactggaggctaatcat
gtcattaataactcacaggtttgggttggcaccattgggtcaggccccaagggtcgcagt
ctctgtgctacctaccagcacacggaaacatttgagttccaggatgaagtgggagcactt
gtgttatctgtgtgccagactgtgagccaaggaattttgtgtttcctgccatcttataag
ttactagaaaagttaaaagaacgttggctctccactggtgtatggcataatctggagttg
gtgaagacagtcattgtagagccacagagaggagaaaaaactgattttgatgaattactg
cagatgtactatgatgcgatcaagtacaaaggagaaaaagatggcgccctcctggtggca
gtttgtcgtggtaaagtgagtgagggtctggatttctcagatgacaacgcccgtgctgtc
ataacaataggaattccttttccaaatgtgaaagatctacaggttgaactaaagcgacaa
tataatgaccagcattcaaaattaagaggtcttttaccaggtcgtcagtggtatgaaatt
caagcatacagggccttaaaccaggccctaggtaggtgtattcgacacagaaatgattgg
ggagctcttattctagtggatgatcgcttcaggagtaacccaagtcgatacatatctgga
ctttctaagtgggttcggcagctgattcagcaccattcaacctttgagagtgcgctggag
tccttggctgaattttccaaaaagcaccgaaaggtcattgatgtatacaaagaagacaga
aaatctatacaggacaatgagtctccgcttgcagtggcttgtttgaaggataatacctca
acttatttattagaagcagcaagccatctatcaccagaatatcctagggaagatgatcca
ttattattggaagagtctacccaggcagtaggagcagaaaaaattgtgatttccagatcc
acaagcccaaccttcaacaaacaaacaaacagagttagctggtctggcagtaattttctg
gaacagtatcttactggtaaaattttgactggaacacctaagtttaggtcatcagaagac
tgtgcctctaattcttccactttcaaaacagaaaagggatgtgaagcagttttgccactc
actgataaatatgagtcctcctctctgacagtaaacacatcacttggaccatgccctcaa
tcggaaaccgttgttccatcaataaagattaatgctactctcctgaatccagaagatcca
gacattctgttatctctagtaagtgaagaagctgaactttctacttcaaatacagctttt
gaaacagaagcagaggatgaatctatctattttacacccgaactttatgatcccatagat
acaaatgaagaaaagaatgaactagttggaactgatagagacaacagattggctaataat
tcaaattgcattttagctgaagatctttttgaaattaaaactatgaaaggaatggattca
gtcagagaaatgaaagctgaggattgcacaggcacaaagttgaatagactcacgcatatt
aaagaaagtaaagttgatgacattggtagtaatgtaaaaatgactcatataaatgaattg
gaactgggaaaaaactcatga
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