Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112408657
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Entry
112408657 CDS
T08872
Symbol
COL6A1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi04151
PI3K-Akt signaling pathway
nasi04510
Focal adhesion
nasi04512
ECM-receptor interaction
nasi04518
Integrin signaling
nasi04820
Cytoskeleton in muscle cells
nasi04974
Protein digestion and absorption
nasi05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
112408657 (COL6A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112408657 (COL6A1)
04518 Integrin signaling
112408657 (COL6A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112408657 (COL6A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
112408657 (COL6A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
112408657 (COL6A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
112408657 (COL6A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nasi04147
]
112408657 (COL6A1)
00536 Glycosaminoglycan binding proteins [BR:
nasi00536
]
112408657 (COL6A1)
Exosome [BR:
nasi04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112408657 (COL6A1)
Glycosaminoglycan binding proteins [BR:
nasi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112408657 (COL6A1)
Hyaluronan
Extracellular matrix or blood plasma proteins
112408657 (COL6A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
Motif
Other DBs
NCBI-GeneID:
112408657
NCBI-ProteinID:
XP_024614170
UniProt:
A0A341CI20
LinkDB
All DBs
Position
Unknown
AA seq
1027 aa
AA seq
DB search
MSLPRVLLALLLQACWATAQDDVAASRAIAFQDCPVDLFFVLDTSESVALRLKPYGALVD
KVKAFTKRFIDNLKDRYYRCDRNLVWNVGALHYSDEVEIIRGLTRMPSGRDALKSSVDAV
KYFGKGTYTDCAIKKGLEELLVGGSHLKENKYLTVVTDGHPLEGYKEPCGGLEDAVNEAK
HLGVRVFSVAITPDHLEPRLSIIATDHTYRRNFTAADWGQSRDAEAVISQTIDTITDMIK
NNVEQVCCSFECQPARGPPGLRGDPGYEGERGKPGLPGEKGDAGDPGRPGDLGPVGYQGM
KGEKGSRGEKGSRGPKGYKGEKGKRGVDGVDGMKGETGYPGLPGCKGSPGFDGIQGPLGP
KGDAGAFGLKGEKGEPGADGEPGRPGNTGPPGDEGEPGAPGPLGEKGEAGDEGNAGPDGP
PGERGSPGERGPRGTPGARGPRGDLGEAGPQGDQGREGPIGIPGDPGEAGPTGPKGYRGD
EGPPGTEGPRGASGPPGPPGDPGLMGERGEDGPPGNGTEGFPGFPGYPGSRGPPGINGTK
GYPGLKGDEGEAGDPGEDNNDIPPRGAKGAKGYRGPEGPQGPPGPVGPPGPDECEILDII
MKMCSCCECKCGPIDILFVLDSSESIGLQNFEISKDFIVKVIDRLSRDELVKFEPGQSHA
GVVQYSHNQMQEHVDLRDPNIRTAQDLKEAIKKLRWMGGGTFTGEALQYTRNRLLPPTQN
DRIALVITDGRSDTQRDTTPLSVLCGPDIQVVSVGIKDVFGFAAGSDQLNVISCQGLAPL
GRPGISLVKENYAELLDDGFLKNITAQICIDKKCPDYTCPITFSSPTDITILLDGSASVG
SHNFDTSKRFAKRLAERFLTAGQTDPGQEVRVAVVQYSGTGQQRPERAGLQFMQNYTVLA
SALDTMDFFNDATDVTDALGYVTRFYREASPGATKKRLLLFSDGNSQGATAATIEKAVQE
AQRAGIEIFMVVVGSQVNESHVRVLVTGKAAEYDVAFGERHLFRVPSYQALLRGVFYQTV
SRKVALG
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgagtctgccccgtgttctgctagccctgctgctgcaggcctgctgggccaccgcgcag
gacgatgtggcagcctcgagggccatcgccttccaagactgccccgtggacttgtttttc
gtgttggacacttccgagagcgtggcgttgaggctgaagccctacggggctctggtggac
aaggtcaaggccttcaccaagcgcttcatcgacaacctgaaggacaggtactaccgctgt
gaccgcaacctggtgtggaacgtgggcgcgctacactacagcgacgaggtggagatcatc
cgcgggctcacgcgcatgcccagcggccgagacgcgctcaagagcagcgtggacgcggtc
aagtacttcggcaaaggcacctacacggactgcgccatcaagaaggggctggaggagctg
ctcgtggggggctcccacctgaaggagaacaagtacctgaccgtggtgaccgatgggcac
cccctggagggctacaaggagccgtgcgggggcctggaagacgccgtgaatgaggccaag
cacctgggcgtcagagtcttctctgtggccatcacacccgaccacctggagccacgtctg
agcatcattgccacggaccacacgtaccggcgcaacttcacggcggcggactgggggcag
agccgtgacgcggaggccgtcatcagccagaccatcgacaccatcacggacatgatcaaa
aacaacgtggagcaagtgtgctgctccttcgagtgccagcccgccagaggacctcccggg
ctgcggggcgaccccgggtatgagggagaaagagggaagccaggactcccgggagagaaa
ggagacgccggagaccccggaaggcctggggacctcggacccgtcggctaccagggcatg
aagggagaaaaagggagccgaggggagaagggctccaggggacccaagggctacaagggc
gagaaggggaagcgtggcgtggacggcgtggatggcatgaagggggagacggggtaccct
ggcctgccaggctgcaagggctcgcccggattcgatggcatccaaggaccccttgggccc
aagggcgacgcgggtgccttcggactgaaaggagagaagggtgagcctggagcagacggg
gagcctgggaggccagggaacacggggccccccggagacgagggtgagcccggagcgcct
ggtcccctgggagagaagggagaagccggcgacgagggaaacgcgggaccggacggaccc
cccggagagaggggcagccctggggaaagaggaccacgggggaccccaggcgcgcggggc
ccgagaggagacctgggcgaagctggaccccaaggtgaccagggacgagaaggccccatt
ggcatccccggagacccgggtgaggctggccccactggaccaaaaggataccgcggcgac
gaggggcctccagggaccgagggccccagaggagcctcagggcccccaggaccccccgga
gaccccgggctgatgggcgaaaggggtgaagatggcccccctggaaatggcaccgagggc
ttccccggcttccctggctatccgggcagcaggggtcctcccgggataaatggcaccaaa
ggctaccctggcctcaagggagacgagggagaagccggggaccccggagaggacaacaat
gacattcctccccgaggcgccaaaggagcaaagggctaccgaggccccgaaggcccccag
ggacccccaggacccgtgggaccaccagggccagacgaatgcgagattttggacatcatc
atgaaaatgtgctcttgctgtgagtgcaagtgcggccccatcgacatcctgttcgtgctg
gacagctccgagagcatcggcctgcagaacttcgagatctccaaggacttcatcgtcaag
gtcatcgaccggctgagcagggacgagctggtcaagtttgagcccgggcagtcgcacgcg
ggcgtggtgcagtacagccacaaccagatgcaggagcacgtggacctgcgggaccccaac
atcaggaccgcccaggacctcaaggaagccatcaagaagctgcggtggatgggtggaggc
accttcacaggcgaggctctgcagtacacccggaaccggctgctgccacccacccagaac
gaccgcatcgccctggtcatcacggacggccgctcggacacccagagggacaccacccca
ctcagcgtgctctgcggccctgacattcaggtggtctccgtgggcatcaaggatgtgttt
ggcttcgccgcgggctccgaccaactcaacgtcatctcctgccaaggcctagcgcccctg
gggcggccgggcatctcgctggtcaaggagaattacgcagagctgctggacgatggcttc
ctgaagaacatcactgcccagatctgcatagacaagaaatgtccagattacacctgccca
atcaccttctcctccccgaccgacatcaccatcctgctggacggctcggccagcgtgggc
agccacaacttcgacacctccaagcgcttcgccaagcggctggccgagcgcttcctgacg
gcgggccagacggacccgggccaggaggtgcgcgtggcggtggtgcagtacagcggcacc
gggcagcagcggccggagcgtgcggggctgcagttcatgcagaactacaccgtgctggcc
agcgccctggacaccatggacttcttcaacgatgccaccgatgtcaccgacgccctgggc
tacgtgacccgcttctaccgcgaggcctcgcccggcgccaccaagaagaggctgctgctc
ttctccgacggcaactcgcagggcgccacggcggccaccatcgagaaggccgtgcaggag
gcccagcgggcaggcatcgagatcttcatggtggtggtgggctcccaggtgaacgagtcc
cacgtgcgcgtcctggttaccggcaaggcggccgagtatgacgtggccttcggcgaacgc
cacctgttccgcgtgcccagctaccaggcgctgctgcgcggcgtcttctaccagacggtg
tccaggaaggtggcgctgggctag
DBGET
integrated database retrieval system
