KEGG   Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112408960
Entry
112408960         CDS       T08872                                 
Symbol
COP1
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RFWD2
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
nasi  Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi04115  p53 signaling pathway
nasi04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:nasi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    112408960 (COP1)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    112408960 (COP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:nasi04121]
    112408960 (COP1)
Enzymes [BR:nasi01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     112408960 (COP1)
Ubiquitin system [BR:nasi04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    112408960 (COP1)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     112408960 (COP1)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st WD40_Gbeta Beta-prop_EML_2 Beta-prop_WDR3_2nd zf-C3HC4_2 Beta-prop_EIPR1 WDR55 Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_WDR19_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_C zf-C3HC4 zf-RING_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd zf-RING_UBOX Beta-prop_EML zf-C3HC4_3 Beta-prop_DCAF4 zf-RING_5 Beta-prop_WDR90_POC16_2nd zf-C3HC4_4 Beta-prop_Aladin RING_XB3-XBAT31 WD40_RFWD3 Beta-prop_WDR35_TULP_N WD40_like Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_IFT122_1st zf-rbx1 zf-RING_10 zf_C2H2_10 RING_ZNF598 zf-RING_11 Sina_RING
Other DBs
NCBI-GeneID: 112408960
NCBI-ProteinID: XP_024614598
UniProt: A0A341CJ25
LinkDB
Position
Unknown
AA seq 710 aa
MSGSRQAGSGSAGTSPGSSAASSVTSASSSLSSSPSPPSVAASAAALGSGGXXXXXXXXX
XXXXXSRLSCAARPSAGVGGSSSSLGSGSRKRPLLAPLCNGLINSYEDKSNDFVCPICFD
MIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNELILKQKQRFE
EKRFKLDHSVSSTNGHRWQIFQDLLGTDQDNLDLANVNLMLELLVQKKKQLEAESHAAQL
QILMEFLKVARRNKREQLEQIQKELSVLEEDIKRVEEMSGLYSPVSEDSTVPQFEAPSPS
HSSIIDSTEYSQPPGFSGSSQTKKQPWYNSTLASRRKRLTAHFEDLEQCYFSTRMSRISD
DSRTASQLDEFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGV
TKKIKVYEYGTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGF
TGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCV
KFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSASTDSQ
LKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFD
TVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV
NT seq 2133 nt   +upstreamnt  +downstreamnt
atgtctgggagtcgccaggccgggtcgggctcagccgggaccagccctggctcctctgcg
gcctcctcggtgacttccgcctcctcgtccttatcctcttcaccgtcgcccccttccgta
gcggcttcggccgcggcgctggggtccggcggnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnntcccggctcagctgcgcagccaggcccagcgccggcgtaggaggg
agcagctccagcctagggagcggcagcaggaagcgacctctgcttgcccccctgtgcaac
gggctcatcaactcctacgaggacaaaagcaacgacttcgtctgccctatctgctttgat
atgattgaggaagcatacatgacgaagtgtggccacagcttttgctacaagtgtattcat
cagagtttggaggacaataatagatgtcccaagtgtaactatgttgtggataatattgac
catctgtatcctaatttcttggtgaatgagctcattctcaaacagaagcaaagatttgag
gaaaagaggttcaaattggaccactcagtgagtagcaccaatggccacaggtggcaaata
tttcaggatttgttgggaactgaccaagataatcttgatttggccaatgtcaacctcatg
ttggagttactagtgcagaagaagaaacaactggaagcagaatcacatgcagcccaacta
cagatccttatggaattcctcaaggttgcaagaagaaataagagagagcaactggagcag
attcagaaggagttaagtgttttggaagaggatatcaaaagagtggaagaaatgagcggc
ttatactctcctgtcagtgaggatagcacagtgcctcaatttgaagctccttctccatca
cacagtagtattattgattccacagaatacagccaacctccaggtttcagtggcagttct
cagacaaagaaacagccctggtataacagcacattagcatcaagacgaaaacgactcact
gctcattttgaagacttagagcaatgttacttttctacaaggatgtctcgtatctcagat
gacagtcgaactgcaagccagttggatgaatttcaggaatgcttgtccaagtttactcga
tataattcagtacgacctttggctacattatcatatgctagtgatctctataatggttcc
agcatagtttctagtattgaatttgaccgggattgtgactactttgcaattgctggggtt
acaaagaagattaaagtctatgaatatggcacagtcattcaggatgcggtggatattcat
taccctgaaaatgaaatgacctgcaattccaaaatcagctgtatcagttggagtagttac
cataagaacctgttagccagcagtgattatgaaggcaccgtcatcctatgggatggattc
acaggacagaggtcaaaggtctatcaggagcatgagaaaaggtgttggagtgttgacttt
aatttgatggatcctaaactcttggcttcgggttctgatgatgcaaaagtgaagctatgg
tctaccaacctagacaactcggtggcaagcattgaggcaaaggctaacgtgtgctgtgtt
aaattcagcccctcttctagataccatctggctttcggctgtgcagatcactgtgttcac
tactatgatcttcgtaacactaaacagccaatcatggtattcaaaggacaccgaaaagca
gtctcttatgcaaagtttgtgagtggtgaggaaattgtctctgcttcaacagacagccag
ctaaagctgtggaatgtagggaagccatactgtctacgttccttcaagggtcatatcaat
gaaaaaaactttgtaggcctcgcttccaatggagattatatagcttgtggaagtgagaac
aactctctttacctgtactataaaggactttctaagactttgctaacttttaagtttgat
acggtcaaaagtgttctggacaaagaccgaaaagaagatgatacaaatgagttcgttagc
gctgtgtgctggagggcactgccagatggggagtccaatgtgctgattgctgctaacagt
cagggtacaattaaggtgctagagttggtatga

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