Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112410239
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Entry
112410239 CDS
T08872
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112410239 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nasi03041
]
112410239 (DDX42)
Enzymes [BR:
nasi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112410239 (DDX42)
Spliceosome [BR:
nasi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
112410239 (DDX42)
Complex B
112410239 (DDX42)
Complex C
U2 SnRNP specific factors
112410239 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
112410239
NCBI-ProteinID:
XP_024616462
UniProt:
A0A341CRL1
LinkDB
All DBs
Position
Unknown
AA seq
940 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSGFGKSAPPQLPSFYK
IGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPVDSDSDDDPLEAFMA
EVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDNL
EYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNL
RVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGS
GKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVY
GGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQV
RSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSG
PSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHSLGLLHGDMDQSERNKVI
SDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTL
LTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYR
ERPGLGSENTDRGSNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQK
AGSSAAGASGWTSAGSLNSVPTNSAQQGHNSPDSPIASATKGIPGFGSTGNLSSAPVTYP
SAGAQGVNNAASGNNSREGIGGGNGKRERYTENRGGSRHSHGESGNRHGDSPRHGDGGRH
GEGYRYPESSSRHADGRRHADGHPHGENRHGGGGGRHGESRGASDGRNGESRKEICNRES
KMDPKVDSTKMDKMDSKTDKTTDGFAVPEPPKRKKSRWDS
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccctggcactaagaggggatttggctttggaggtttcgct
attagtgcgggaaagaaggaggaaccaaaactcccacagcagtcccatagtgcctttggg
gcaaccagctcttctggatttggaaagtcggctccaccacagctcccttccttctacaaa
attggttctaaacgggccaactttgatgaagaaaacgcatattttgaagatgaggaagaa
gattctagcaatgttgatttaccttacattcctgctgaaaactcacctacccgccagcaa
ttccattccaagccagtagattctgacagcgatgatgatcccttagaggcattcatggct
gaagtggaggatcaagcggctagagacatgaagagacttgaagaaaaggacaaggaaaga
aaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttatttt
cggtacatggcagagaatccaactgctggcgtggttcaggaggaagaggaagataatttg
gaatatgatagtgatggaaatccaattgcaccttccaaaaaaatcattgatcctcttcct
cccattgatcattcagagattgactatccaccatttgaaaaaaatttttacaatgaacat
gaagagataaccaacctcaccccacagcagctaatagatctccggcataagctcaatctt
cgggtttctggtgctgcacctcctagaccaggaagtagttttgctcattttgggtttgat
gagcaacttatgcaccagattcggaaatctgagtacacacagcccactccaatacagtgc
cagggtgtacctgtggcattaagtggtagagacatgattggtattgccaaaacaggcagt
gggaaaactgcggcctttatctggcccatgttgattcatataatggaccagaaagaattg
gaaccaggtgatggaccaattgcagtgattgtgtgtcctactagggagctttgtcagcag
atccacgcagaatgcaagcggtttgggaaagcgtataatctccgatcagtggccgtgtat
ggaggagggagcatgtgggagcaggccaaggcccttcaggaaggggcagagattgttgtc
tgtacaccaggtcgacttattgatcatgtgaagaagaaagctaccaaccttcaaagagtc
tcttaccttgtatttgatgaagcagatcgaatgtttgacatgggatttgagtaccaggtg
cgatccatagcaagtcatgtccgtcctgacagacagactctcttattcagtgcaactttt
cggaaaaagattgaaaaactggccagagacatcctgattgatcctattcgtgtggtgcag
ggggatattggagaggcaaatgaagatgtgactcagattgtggagattctgcattctggg
cctagtaaatggaactggctcacccggcgtctagtggagttcacctcttcaggaagtgtc
ctcctgtttgttactaaaaaagccaatgctgaagagctagccaataaccttaaacaggag
ggtcatagtcttggcctgctccatggtgacatggatcagagtgaaagaaacaaggttatt
tcagactttaagaaaaaggacatcccagtcctcgtggccacagatgttgcagcccgtggt
ctggacattccttcaattaagactgtcattaactatgatgtggcccgagatattgatacc
catacgcataggattggccgaacaggacgagcgggtgagaaaggcgtggcctataccttg
ctgacacccaaggacagcaattttgccggtgaccttgtccggaacttggaaggagccaat
caacatgtttccaaggaactcctagatttggccatgcagaatgcctggtttcggaaatcc
cgcttcaaaggagggaaagggaaaaagctgaacattggtggaggaggcctaggctacagg
gagcggcctggcctcggctctgagaacacggaccgaggaagtaacaacaatgttatgagc
aattatgaggcctacaagccctccacaggagccatgggagatcggctgacggcaatgaaa
gcagctttccagtcacagtacaagagtcactttgttgctgccagtttaagcaaccagaag
gctggaagctctgctgctggggcgagtggatggactagtgcagggagcttgaattcagtt
ccaactaattcagcccaacagggccataacagtcctgacagccccattgccagtgccacc
aagggcatcccaggctttggcagtactgggaacctcagcagtgccccagtgacctatcct
tctgccggagcccagggagtcaacaacgcagcttcagggaataacagccgagaagggatt
gggggtggcaatgggaaaagagagagatatactgagaaccggggtggaagccgtcatagt
cacggagagagtgggaatcggcatggtgatagcccacgtcatggagacggtggtcgccat
ggagagggataccgctacccagaaagcagcagccgtcatgctgatgggcgccgtcatgct
gatggccatcctcatggagagaacaggcatggaggaggtggaggcagacatggagagagc
cgaggtgcaagtgatggtcggaatggtgaaagcaggaaagaaatttgtaatcgtgaaagc
aagatggaccccaaggtggacagcaccaagatggacaagatggacagcaagacagataag
actactgatggctttgctgtccccgagccacccaagcgcaagaaaagtcgatgggacagt
tag
DBGET
integrated database retrieval system
