Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112413392
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Entry
112413392 CDS
T08872
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112413392 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nasi03019
]
112413392 (MTREX)
03041 Spliceosome [BR:
nasi03041
]
112413392 (MTREX)
03009 Ribosome biogenesis [BR:
nasi03009
]
112413392 (MTREX)
03016 Transfer RNA biogenesis [BR:
nasi03016
]
112413392 (MTREX)
Enzymes [BR:
nasi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112413392 (MTREX)
Messenger RNA biogenesis [BR:
nasi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
112413392 (MTREX)
Spliceosome [BR:
nasi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112413392 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
112413392 (MTREX)
Ribosome biogenesis [BR:
nasi03009
]
Eukaryotic type
Pre-60S particles
Helicases
112413392 (MTREX)
Transfer RNA biogenesis [BR:
nasi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
112413392 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
112413392
NCBI-ProteinID:
XP_024621111
UniProt:
A0A341D277
LinkDB
All DBs
Position
Unknown
AA seq
1040 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAPGAKKDKEKGKWKGPPGSAEKAGKRFDGKLQSESTNIGKN
KRDADFERTDEPIFGKKPRVEESITEDLSLSDLMPRVKVQSVETVEGCTHEVALPADEDY
LPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREK
QRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEV
MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ
PCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQK
GRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEE
VFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT
ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEK
MSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVV
EKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKV
KNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKSDE
KGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDD
MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA
RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSA
EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSF
KPHLMDVIYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENK
FSEGITKIKRDIVFAASLYL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgtttggggatgagctcttcagcgtgtttgaggacgactcgaccactgcg
cccggagccaaaaaagacaaggagaaggggaagtggaaggggccgccagggtctgcggaa
aaggccggaaaacgttttgatggtaaattacaatctgagtcaactaatattggaaaaaac
aagagagatgcagacttcgagcgcacagatgaacccatttttggaaagaagcccagggta
gaagagtcaataactgaagacttaagtttgtcagacttgatgcccagggtcaaggtacaa
tcagttgaaactgttgaagggtgtacacatgaggttgcacttcctgcagatgaagattat
ctaccacttaaacctcgcgttggaaaagctgcaaaggaatacccgttcattcttgatgct
tttcaaagagaagccattcagtgtgttgataataatcagtctgttctagtatctgcacat
acatcagcaggaaaaactgtatgcgctgaatatgccattgcattggccttaagggaaaaa
cagcgtgtaatatttactagcccaattaaggccctgagtaaccagaaataccgtgaaatg
tatgaagaatttcaagatgttggtctgatgactggagatgttactattaatcctacggca
tcttgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttctgaagtt
atgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattcagagcgt
ggtgtcgtatgggaagaaactattattttgcttcctgataatgttcactatgtctttctt
tcggctactattccaaatgcccggcagtttgctgaatggatttgccacttacataaacag
ccttgtcatgtaatttacacagattatcggcctactccattacagcactacatttttcca
gcagggggagatggtctgcaccttgtggttgatgaaaatggtgacttcagagaagataat
tttaatactgcgatgcaggtacttcgagatgctggtgatttggcaaaaggagatcagaag
gggagaaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatgattatg
gaaagaaactttcaacctgtaattattttcagttttagtaagaaagattgtgaagcctac
gcacttcaaatgaccaaattagatttcaacacagatgaagaaaagaagatggttgaagaa
gtattcagtaacgcaattgactgcttgtcagatgaagataaaaagctccctcaggttgag
catgtacttcctctcttgaagaggggcattggtattcaccatggtggtttacttcctatt
ttgaaagaaactatagaaattctcttttctgaaggattgataaaggccttatttgccact
gagacttttgctatggggattaacatgccagctagaactgttttatttacaaacgcccga
aaatttgatgggaaggatttccgatggatttcctctggtgaatacattcagatgtctggt
cgtgctggaaggaggggaatggatgacagaggaattgtaattcttatggtagatgaaaag
atgagcccaacaattggaaaacaactacttaagggctcagctgatccactaaatagtgct
ttccatttgacctacaacatggttttgaacttactacgagtagaagaaataaatcctgag
tacatgttggaaaaatccttctaccagtttcagcattatagagcaattccaggagtagta
gagaaggtaaagaactcagaagaacagtataataaaatagtaataccaaatgaagaaagt
gtagtcatctattataagattaggcagcagcttgccaaattgggtaaagaaattgaagaa
tatattcacaaaccaaaatattgcttaccatttctacaaccaggtcgtttggtaaaggta
aagaatgaaggagacgattttggctggggtgtagtggtgaatttctcaaaaaaatcaaat
gttaagcctaattctggtgaactggatcctttgtatgtagtggaagtacttctgcgctgt
agcaaagagagcttgaaaaattcagctactgaggctgcaaaaccagctaagtctgatgag
aaaggagagatgcaggttgttccagttttggtgcatctcctgtccgctatcagcagtgtt
aggctttacattcctaaagaccttcgaccactggacaatagacagagtgttttaaaatca
atacaggaagttcagaaacgttttcctgatggtgttcccttattagatcctattgatgac
atgggcattcaagatcaaggactgaaaaaagtcatccagaaagtagaggcttttgagcat
cgaatgtattctcatccacttcacaatgatccaaatctggaaactgtgtatacgctttgt
gaaaaaaaagcacagattgcaatagacattaaatccgcaaagcgagaactaaagaaagca
agaactgtcctacaaatggatgaactcaaatgtcgcaaacgtgttttaaggaggttggga
tttgctacgtcttctgatgtcatagagatgaaaggacgagtggcttgtgaaataagcagt
gctgatgaactccttctaactgagatgatgtttaatggccttttcaatgacctatcagca
gaacaggcaacggcactactaagctgctttgtgtttcaagagaattctagtgagatgccc
aaattaacagagcaattagcaggaccacttcgtcaaatgcaggaatgtgctaaaagaatt
gcaaaagtttcagcagaagccaaattggaaattgatgaggagacttacctaagctcattt
aaacctcacttaatggatgtaatatatacctgggcaactggagctacatttgcccatatc
tgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctggaagaa
ctacttcgacaaatgtgtcaagcagcaaaagccattggaaacactgagctggaaaataaa
ttttcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctctactta
taa
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