KEGG   Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112414327
Entry
112414327         CDS       T08872                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
nasi  Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nasi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112414327 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:nasi03041]
    112414327 (SNRNP40)
Spliceosome [BR:nasi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    112414327 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    112414327 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_TEP1_2nd WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SCAP WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_Vps41 eIF2A Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_NWD2_C Beta-prop_RIG_1st Cytochrom_D1 WD40_like WDR54 Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 112414327
NCBI-ProteinID: XP_024622559
UniProt: A0A341D6M7
LinkDB
Position
Unknown
AA seq 358 aa
MIEQQKRKGPELPLVPVKRPRHELLLGAAGSGPGAGQQQAAPGALLQAGPPRCSSLQAPI
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgatagaacagcagaagcgaaagggcccagagttaccgctggtcccagtcaagcggccg
cggcatgaattgcttttgggagctgcggggtcgggccccggagccgggcagcagcaggcg
gcgccgggagctttgctgcaagcggggcctccaagatgttcctcccttcaagccccaatc
atgcttctctcaggacatgaaggggaagtgtattgctgcaagtttcaccccaatggatcc
accttagcatctgcaggatttgaccgactgatattgttgtggaatgtctatggtgactgc
gataactatgctacattgaagggacacagtggagcagtgatggaactgcattataacaca
gatggcagtatgctcttctcagcatccacagataaaactgtggcggtgtgggatagtgaa
acaggcgagagagttaaaagactgaaggggcacacttcctttgtgaattcctgttatccg
gccaggaggggtccccagcttgtctgcactggcagtgacgacggtacagttaagctttgg
gacatccgtaagaaagcagcgatccagacatttcagaacacctaccaagtgttagctgtg
accttcaatgacacaagcgatcagattatttctggtggaatagacaacgatatcaaggtc
tgggacctgcgccaaaataagctgacctacacgatgagaggccatgcagattcagtgact
ggcctgagtttaagctctgaaggctcttacctcttgtccaatgcaatggacaatacagtg
cgagtctgggatgtccggccatttgctcccaaagaaagatgtgtgaagatatttcaagga
aatgtgcacaactttgaaaagaatcttctgagatgttcttggtcacctgatggaagcaag
atagcagctggctcagccgacaggtttgtgtatgtgtgggataccacaagcaggaggatc
ttgtataagctacccggccacgctggctccatcaatgaagtggctttccaccccgacgaa
cccatcattctctcagcatccagtgacaagagactatatatgggagagattcagtga

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