Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112415616
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Entry
112415616 CDS
T08872
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi03030
DNA replication
nasi03410
Base excision repair
nasi03420
Nucleotide excision repair
nasi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112415616 (LIG1)
03410 Base excision repair
112415616 (LIG1)
03420 Nucleotide excision repair
112415616 (LIG1)
03430 Mismatch repair
112415616 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nasi03032
]
112415616 (LIG1)
03400 DNA repair and recombination proteins [BR:
nasi03400
]
112415616 (LIG1)
Enzymes [BR:
nasi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
112415616 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
112415616 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
112415616 (LIG1)
DNA replication proteins [BR:
nasi03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
112415616 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
112415616 (LIG1)
DNA repair and recombination proteins [BR:
nasi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
112415616 (LIG1)
NER (nucleotide excision repair)
Other NER factors
112415616 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
112415616 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
112415616
NCBI-ProteinID:
XP_024624486
UniProt:
A0A341DC57
LinkDB
All DBs
Position
Unknown
AA seq
922 aa
AA seq
DB search
MQRSIMSFFQPKKEGKVKKPEKEIPNSTRETESPPKVALKERNRVEPEGDSPVKRPGRKT
ARVLGSEGEDEEEEAPKPPKIQKRAPDSPPVSPPSPGTLPESSPSHSSTSPTVVSPSGIP
KRRTARKQLSKRTFQDVLQEQGKDEDGGTKKKRKEEEEEEEELETPTESLTEPEGGNKKE
AEEGDQPRSPPEPLKTSTKPPTESVSEPKVAVKQGPQEDGQAKPPPKAPKTLSSFFSPRK
PAIKQEAKEEGPSALRKDETKGHLDPSSYNPAKNNYHPVDDACWKVGQRVPYLAVARTFE
KIEEVSARLRMVETLSNLLRSVAALSPADLLPVLYLCLNRLGPPQQGLELGIGDGILLKA
VAQATGRQLESVRAEAAEKGDVGLVAESSRSTQRLMLPPPALTASGVFTKFRDIAQLAGS
ASTAKKMDVIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFP
PAVVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGVERLPEHCRLSPG
VPLKPMLAHPTRGVSEVLRRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGR
YPDIISRIHKIKLPSVTSFILDAEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCL
YAFDLIYLNGESLVREPLSRRRQLLRQNFVETEGEFVFATSLDTKDTDQIAEFLEQSVKD
SCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGG
FLLAAYDEESEELQAICKLGTGFSDEELEGHHQTLQALVLPTPRSYVRADGAVAPDHWLD
PSAVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFICVREDKKPEEATTSAQVACLY
RKQSQIQNQQGAEPDSDLEDFY
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgcagagaagtattatgtcatttttccagcccaagaaagagggcaaagtgaagaagcca
gagaaggagatacccaacagcaccagagaaacagagtcccctccaaaggtggcgctgaag
gagcggaatagagtggaacctgagggcgactctccagtgaagaggccagggaggaagacg
gcccgggtcctgggcagcgaaggggaggacgaggaggaggaagcccccaagccccccaaa
atccagaagcgtgctccagattccccaccagtctcccctcccagtcctggcacactgcct
gagagcagcccttcccactctagcacctctcccacggtcgtctccccgtcagggatcccg
aagcgtcgcacggcccggaagcagctttccaaacggacatttcaggatgtcctgcaagag
cagggcaaggacgaggacggaggaaccaagaagaagaggaaggaggaggaggaggaggaa
gaagaattagagacaccgacagaaagcctcacagagcctgaagggggcaacaagaaggaa
gcagaagaaggggaccagcccaggtcaccccctgagcccctgaagacctccacaaagccc
ccaacagaaagcgtttcagagcccaaggtggccgtgaagcagggaccacaggaggacggc
caggctaagcctccccccaaagctcccaagacgctcagcagtttcttctctccccggaag
ccagcaatcaaacaagaagcaaaagaagaggggcccagcgctctgagaaaggacgagacc
aagggacacctggacccatccagctacaatcctgccaagaacaactaccatcccgtcgac
gatgcttgctggaaggtgggccagagagtcccttacctggctgtggcccggacgtttgag
aagatcgaagaggtttctgcgcggctccggatggtggagacactgagcaacctcctgcgc
tccgtggcggccctgtcacctgctgacctcctccctgtcctctacctctgcctcaaccgc
ctggggccgccccagcagggcctggagctcggcattggcgacggcatcctcctcaaggcg
gtggcccaggccacaggccggcagctcgagtcggtccgggccgaggcggccgagaagggc
gacgtggggctggtggccgagagcagccgcagcacccagaggctcatgctgcccccgccc
gccctcaccgcctccggcgtcttcaccaagttccgggacatcgcgcagctggccggcagc
gcttccacagccaagaagatggacgtcatcaaaggcctctttgtggcctgccgccactca
gaagcacgattcatcgccagagccctgagtggacggctgcgcctcgggctggcagagcag
tcagtgctggcggccctcgcccaggctgtgagcctcaccccgccaggtcaagaattcccc
ccagccgtggtggatgctgggaagggcaagacagcagaggccagaaagacatggctggag
gagcaaggcatgatcctgaagcagacgttctgcgaggtgcccgacctggaccggattgtc
cccgtgttgctggagcatggtgtggagcggctcccagagcactgcaggctgagcccaggg
gtccccctgaaaccaatgttggcccacccaacccggggcgtcagcgaggtcctgagacgc
tttgaggaggcagctttcacctgcgagtacaaatacgatggacagagggcacagatccac
gttttggaaggcggggaggtgaagatcttcagcaggaatcaggaggacaataccggaagg
taccccgatatcatcagccgcatccacaagattaaactcccatcagtcacatccttcatc
ctggacgcggaagctgtggcttgggaccgggaaaagaagcagatccagccattccaagtg
ctcaccacccgcaaacgcaaggaggtggacgcggcagagatccaggtgcaggtgtgtcta
tacgccttcgacctcatctacctcaatggagagtccctggtacgtgagcccctttcccga
cgccggcagctgctccggcagaacttcgtggagacggagggcgagtttgtctttgccacc
tctctagacaccaaggacacggaccagatcgccgagttcttggagcagtcggtgaaagac
tcctgcgaggggctgatggtgaagaccctggatgtggacgccacctacgagatcgccaag
agatcgcacaactggctcaagctgaagaaggactacctggacggcgtgggcgacaccctg
gacctcgtggtgatcggcgcctacctgggccggggaaagcgggccggccggtacgggggc
ttcctgctggccgcctacgacgaggagagcgaggaactgcaggccatatgcaagctcgga
acgggcttcagcgacgaggagctagaggggcatcaccagaccctccaggccctggtgctg
cccaccccacgctcctatgtccgggccgacggcgccgtggcccctgaccactggctggac
cccagcgccgtgtgggaggtgaagtgcgcagacctctccctctcccccatctacccggct
gcccggggcctggtggatagcgagaagggaatctccctccgtttccctcggttcatctgc
gtccgtgaggacaagaagccggaggaggccaccaccagtgcccaggtggcctgtctgtac
cggaagcaaagtcagattcagaaccagcaaggcgcagagccagactccgacctggaagat
ttctactag
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integrated database retrieval system
