Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112415940
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Entry
112415940 CDS
T08872
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
112415940 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nasi03400
]
112415940 (LIG3)
Enzymes [BR:
nasi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
112415940 (LIG3)
DNA repair and recombination proteins [BR:
nasi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
112415940 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
112415940
NCBI-ProteinID:
XP_024624920
UniProt:
A0A341DDP4
LinkDB
All DBs
Position
Unknown
AA seq
1044 aa
AA seq
DB search
MTVCPPTKCTVLNVHLFVYIFREFRASPPWTSFNFPSHPVSCMTLAFKILLPPTLRALSQ
KELCLFREQHHWPDIRQFSRWSETVLHGHHHLQRRKPVVSFQESNLRPRATCLVFLPGSH
VGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWY
HIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKAANTPKKKTVV
QAKLTATGQVTSPVKGASFVTNTNPRKFSGFSAKPNNSGEAHSIPTPKTSLSSSKCDPKH
KDCLLREFRKLCAMVAENPSYNMKTQIIQDFLQKGSAGDGFHGDVYLTVKLLLPGVIKSV
YNLNDKQIVKLFSRIFNCNSDDMARDLEQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVD
EFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAY
EAFKASRNLHDVVERVLRNEQEVKKEPGRKRALSVQASLMTPVQPMLAEACKSIEYAMKK
CPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILD
SEVLLIDNKKGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLFERRKFLH
DNMVEIPNRIMFSEMKQVAKASDLADMINRVIQEGLEGLVLKDVKGTYEPGKRHWLKVKK
DYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPSSQKWCTVTKCAGGHDDATL
ARLQKELDMVKISKDPSKIPNWLKVNKIYYPDFIVPDPKKAAVWEITGAEFSKSEAHTAD
GISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKERAAFTIVAGDEGNSTTGGSSGENE
GISGPAVSHEAPRTSPKQPSTSAKKAGGKLSSSNSKGGNKLTAKPSPVKVGEKRKAPDET
PCQAKVRVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLAQEFDVASATHVLGSRDKN
PEAQQVSPEWIWACIRKRRLVAPC
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgactgtctgtccccctacaaaatgtacagtgctgaatgtgcacctttttgtatacatt
ttcagggagttcagagcctcccccccatggacttcttttaattttcccagccatcccgtg
agctgtatgactttggcttttaagatcctcttaccaccaactctccgtgcgctcagccaa
aaagaactgtgcctattccgagaacaacatcactggcctgacataagacagttcagccgg
tggtcggaaacagttcttcatggacaccaccacctccagagaagaaagcctgttgtgtca
ttccaggaaagcaatctaagaccacgtgccacctgccttgttttcttgccagggtcgcat
gtgggactctgcagtggcccctgtgagatggcagagcaacggttctgtgtggactatgcc
aagcgtggcacagccggctgcaaaaaatgcaaggaaaagattgtaaagggggtgtgccga
atcggcaaagtggtgcccaatcccttttcagagtcagggggcgatatgaaagagtggtac
cacattaagtgcatgtttgagaaactggagcgggcccgggccaccacaaaaaaaattgag
gacctcacagagctggaaggctgggaagagctggaagataatgagaaagaacaaataagc
cagcacattgcagatctgtcttccaaggcagcaaacacaccaaagaagaaaactgttgtc
caggctaagttgacagccactggccaggtgacatctccagtgaaaggtgcctcatttgtc
accaataccaatccccggaaattttctggcttttcagcaaagcccaacaactctggggaa
gcccactcaatacctacccctaagacaagtctgtcctcaagcaaatgtgaccctaagcac
aaggattgtctgctacgtgagtttcggaagttgtgtgccatggtggctgaaaatcctagc
tacaacatgaagacccagatcatccaggacttccttcagaaaggctcagcaggagatggt
ttccacggtgacgtgtacctaacagtgaagctgctgctgccgggtgttattaagagtgtt
tacaacttgaatgataagcagattgtgaagcttttcagccgcatttttaactgcaactca
gatgatatggcacgagacctagagcagggtgacgtgtcagagacaatcagagtcttcttt
gagcagagcaagtctttccccccagctgccaagagccttcttaccatccaggaggtggat
gaattcctcctgcggctctccaagctcaccaaggaggacgagcagcaacaggccctgcag
gacatcgcctccaggtgtacagccaatgaccttaagtgcatcatcaggttgatcaaacat
gatctgaagatgaactcaggtgcaaagcatgtgttagatgccctagaccctaatgcctat
gaagccttcaaagcctcacgcaacctgcacgatgtggtggagcgggtcctccgcaacgag
caggaggtgaagaaggagccaggccggaaacgagctctgagtgtccaggcctcactgatg
accccggtgcagcccatgctggccgaggcctgcaagtccatcgagtatgcgatgaagaag
tgtccgaatggcatgttctctgagatcaagtatgatggggagcgagtccaggtgcataag
aacggggaccacttcagctacttcagccgcagtctcaagccagtcctgccgcacaaggtg
gcccactttaaggactacatcccccaggctttccccgggggccacagcatgatcttggac
tctgaggtgctcctgatcgacaacaagaaaggcaaaccactgccctttgggactctggga
gtgcacaagaaagctgccttccaggatgctaatgtctgcctgtttgtttttgattgtatc
tacttcaatgatgtcagcttgatggataggcctctgtttgagcggcggaagtttcttcac
gataacatggttgaaattcccaaccggatcatgttctcagaaatgaagcaagtcgcaaaa
gcttctgacttggctgacatgatcaaccgggtgatccaagaggggttggaagggctggtg
ctgaaggacgtgaagggtacatatgagcctggaaagcgtcactggctgaaagtgaagaag
gactatttgaacgagggggccatggctgacacagctgacctggtggtgcttggggccttc
tatgggcaagggagcaaaggtggcatgatgtccatcttcctcatgggctgctatgacccg
agtagccagaagtggtgcacagtcaccaagtgtgcaggaggccacgatgatgcgacgctc
gcccgcctacagaaggaactggacatggtgaagatcagcaaggatcccagcaagataccc
aactggctgaaagtcaataagatctactatcctgacttcatcgttccagaccctaagaaa
gctgcggtgtgggagatcacaggggctgaattctcgaaatctgaggcacacacagccgat
gggatatccatccgtttccctcgctgcacccgaatccgtgatgataaggattggaagtct
gccactaacctcccccaactcaaggaactgtaccagctctccaaggagcgggcggctttc
accatagtggccggagatgaggggaactccactacagggggcagcagcggagagaacgag
ggcatctcagggccagctgtgtctcacgaggccccgagaacctcccccaagcagccctcc
accagtgccaagaaggcaggagggaagctgagtagctccaacagcaaaggcggcaacaag
ctgactgcaaagccttcccctgtgaaagtgggagagaagcggaaggctcctgatgagacc
ccatgccaagcaaaggtgagggtgctgctggacatcttcaccggggtgcggctctacctg
ccgccctccacgccagacttcagccgtctccgacgctactttgtggcattcgatggggac
ctggcgcaggaatttgacgtggcctcagccacacatgtgctgggtagtagggacaagaac
cctgaggcccagcaggtgtccccggagtggatctgggcctgtatccgtaaacggagactg
gtagctccctgctag
DBGET
integrated database retrieval system
