Nicotiana attenuata (coyote tobacco): 109208089
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Entry
109208089 CDS
T05870
Name
(RefSeq) flowering time control protein FY
KO
K15542
polyadenylation factor subunit 2
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109208089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109208089
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109208089
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_IFT122_1st
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_1st
DSE1_N
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_Aladin
ASA1
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
CFAP251_N
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR35_TULP_N
WDR90_beta-prop_4th
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_NOL10_N
Beta-prop_WDR41
Beta-prop_SPT8
PAC11
Beta-prop_SCAP
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_VPS8
WD40_like
Tricorn_2nd
Beta-prop_DCAF12
Pep3_Vps18
WD_LRWD1
WDR54
Beta-prop_NUP159_NUP214
B-prop_COPA_B_2nd
Motif
Other DBs
NCBI-GeneID:
109208089
NCBI-ProteinID:
XP_019226657
LinkDB
All DBs
Position
Unknown
AA seq
736 aa
AA seq
DB search
MMTSGDPHQHQHQQHQPMPQQQFQHQHPPHFGEFPRGPQPPPGPPPMMRQPSASSTTLNA
QPPGPAPHPSYDAHADSFAAKRMRKIGQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQPS
PAAAVDVLPAVAYLDNPSTSFAAKFVHTSLNKNRCSINCVAWTPSGRRLITGSHSGEFTL
WNGQSFNFEMILQAHDQAVRSMIWSHNDNWMVTGDDGGTIKYWQTNMNNVKANKNSHKES
VRGLSFCSTDLKFCSCSDDTTVKVWDFARCQEERSLSGHGWDVKSVDWHPTKSLLVSGGK
DNLVKLWDAKSGKELSSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF
RGHQKDVTSLAWHPFHEEYFVSGSFDGSIFHWLVGHEAPQVEITNAHETGVWDLAWHPIG
YLLCSGSNDQTTKFWCRNRPGDPARDKFNLGQQGLGDQNNVLGRMPGNFPGPEPPSTPGA
FASGLLRTEGTIPGVGAALPLSLDSSQGEQKSSMPVSMPIGAPPLPPGPHPSLLAGNQQQ
AYQQNMQQAQHQQSLPQQMTSHPLQPSNLPQLQPPHMPLMPHPHLPRPPHQLQQVNMPGL
PSSMPGSGPIQGMPIPGPMGIQGNMNQMVPPMPQGHFVGMPSGSGPQGNVPPGGMPNGLP
NMQGPQNPGGNQMFPPGRGFNRQQAGQMPLMPGHNPYQQSGNPNTPGMHMQSNFGLQSGM
PPPLPPGPPPHNQGHQ
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgatgacgagtggtgatcctcatcaacatcagcaccagcagcaccagccgatgccacaa
caacaattccagcaccaacaccctccacattttggagagtttccaaggggtcctcaacct
ccaccaggtccacctcccatgatgcggcagccatctgcatcctccactactcttaatgct
cagccacctggacctgctcctcatccttcttatgatgctcatgctgacagttttgctgca
aagagaatgagaaaaattggtcaaagaagagcagttgattacactagtacagttgtaaga
tatatgcagatccgcatgtggcagcgcgactcgagggataggacagtgttacaacctagt
ccagcagcagcagttgatgtattgccagcagttgcctatttggataatccctccacaagt
tttgctgctaaatttgttcatacatctctaaataaaaaccgttgttcaatcaattgtgtt
gcgtggactcctagtgggcggcgcctcattactggatctcatagtggtgaattcacactc
tggaatgggcaatcgtttaactttgaaatgatacttcaggctcatgatcaagcagttagg
tcaatgatatggagccacaatgataactggatggtcactggtgatgatggaggcacaata
aagtattggcaaaccaatatgaataatgtcaaagccaataagaattcacataaagaatct
gtacggggattaagcttctgtagtacagatttaaaattctgctcctgttctgatgacaca
actgttaaagtatgggactttgcaaggtgccaagaagagcgctcattatctggccatggt
tgggatgtgaagagtgttgattggcaccctacaaagtctctattagtctcaggtggaaaa
gataatcttgttaaactttgggatgccaagtcagggaaggagctttcctcatttcatggg
cataagaatactgttctctgtgtaaagtggaatcaaaatggtaactgggtccttactgct
tccaaagatcaaattatcaagctttatgacataagggctatgaaggagcttgaatcattc
cggggacatcagaaggatgtgacatcattggcctggcatccgtttcatgaagagtatttc
gttagcggaagctttgatggttcaatatttcattggcttgtggggcatgaagctcctcaa
gttgaaattacaaatgcacatgaaactggtgtttgggatcttgcatggcaccccattggc
tatctcctttgcagtggcagcaatgatcagacaacaaagttctggtgcagaaataggcct
ggggatccagctcgtgataaattcaatttgggacagcaaggtttgggtgatcaaaacaat
gttcttggtcgcatgcctggtaattttccaggtcctgagcccccatcaactcctggagca
tttgcctctggcttgttacgaactgagggtacaatacctggagttggagctgcattgcca
ctatcgcttgattcatctcaaggagaacagaagtcttccatgccagtttcaatgcctata
ggagctccccctcttcctcctggtccacatccatctcttcttgcgggtaatcagcagcaa
gcatatcaacaaaacatgcagcaagctcagcaccagcagtcactacctcaacaaatgact
tctcatcctttgcaaccgtcgaatttgccacaactacagcctccacatatgcctctaatg
ccgcatcctcatttacctcggccaccacaccaactacaacaagtaaacatgcctggcctt
ccgtcttcaatgccaggttctggacccatccaaggaatgcctatccctggtccaatgggg
atacaaggtaacatgaatcagatggttcctccaatgcctcaaggtcattttgtgggcatg
ccttctggatctggaccacagggcaatgttcctccaggtggaatgccaaatggactacca
aacatgcaaggccctcaaaacccaggaggtaatcagatgtttccaccaggacgaggcttc
aacaggcaacaagctggacaaatgccactcatgcctggacataatccttatcagcaatct
ggaaatccaaacacacctggaatgcacatgcagtcaaacttcggtcttcaatctggaatg
cctccgccattgccaccggggccgcctccacataatcaaggacatcaatag
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integrated database retrieval system
