KEGG   Nicotiana attenuata (coyote tobacco): 109208350
Entry
109208350         CDS       T05870                                 
Name
(RefSeq) WD repeat-containing protein 82
  KO
K14962  COMPASS component SWD2
Organism
nau  Nicotiana attenuata (coyote tobacco)
Pathway
nau03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:nau00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    109208350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nau03019]
    109208350
   03036 Chromosome and associated proteins [BR:nau03036]
    109208350
Messenger RNA biogenesis [BR:nau03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     109208350
Chromosome and associated proteins [BR:nau03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     109208350
    COMPASS/SET1 complex (yeast)
     109208350
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 WD40 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WD40_Gbeta ANAPC4_WD40 WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_NOL10_N Beta-prop_SPT8 Beta-prop_Aladin TRM82_WD WD40_RFWD3 Beta-prop_ACSF4 Beta-prop_Nup120_160 Beta-prop_VPS8 WD40_MABP1-WDR62_1st PAC11 NBCH_WD40 WD_LRWD1 EMC1_C Tricorn_2nd DUF2963
Other DBs
NCBI-GeneID: 109208350
NCBI-ProteinID: XP_019227001
LinkDB
Position
2:complement(43828492..43845075)
AA seq 332 aa
MTALSELNDDIVRSMTVASVFSDFGGQINSLDFHRKEDLLITASEDDSIRLFDIANGKLL
KTTYHKKHGADRICFTHHPHSVICSSIHNLDLHGESLRYLSMYDNRCLRYFKGHKERVVS
LCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPAVAYDQQGLVFAVAMEGGAVK
LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTSNSIYVLDAYGGEKRCGFN
LDPSPTAMEATFTPDGQYVVSGSGDGNLHAWNINTLNKVSSWDSHIGVPSCLKWAPRRVM
FVAASSVLTFWIPNHGGAGNAAGAQTEQVTLQ
NT seq 999 nt   +upstreamnt  +downstreamnt
atgacggcactgtcggagctcaacgatgacattgttcgtagcatgaccgtagcatcagtc
ttctcagattttggcgggcagataaactcacttgattttcatcggaaagaagatttgctg
ataactgcaagtgaggatgactcaattcgactttttgacattgccaatgggaagttgctg
aagactacatatcataagaagcatggagctgatcgaatatgctttacccaccaccctcac
tctgttatatgctcttcaatacacaacttggatttgcatggagaatctttgcggtaccta
tccatgtatgataatcgatgccttcgttactttaagggacataaagagagggttgtgtca
ctgtgtatgtctccagttaatgacagcttcatgtctggttctcttgaccatagtgtcaga
atatgggatcttcgtgtaaatgcctgccagggaattttgcgtctaagaggtaggcctgca
gttgcttatgaccaacaaggccttgtctttgcagtggcaatggaagggggtgccgtcaaa
ttgtttgattcaagatcgtacgacaagggaccctttgataccttcctagttgggggagac
acagctgaggtttgtgacataaaattcagcaatgatggaaaatcaatgctcttaacaact
actagtaacagcatctatgtccttgacgcctatggaggagagaagcggtgtgggtttaat
ctggatccctccccaacagcaatggaggcaacctttacaccagatggccaatatgttgtt
tcaggttcaggagacggaaacttgcatgcatggaacatcaacacactaaataaggtttct
agctgggatagccacataggcgtcccgtcctgcttgaaatgggcaccaagaagagtaatg
tttgttgctgcatcatcagttcttaccttttggatccctaatcatggaggtgctggtaat
gccgctggagcccagacagaacaagttactcttcaatga

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