Nicotiana attenuata (coyote tobacco): 109208435
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Entry
109208435 CDS
T05870
Name
(RefSeq) protein RST1 isoform X1
KO
K27498
focadhesin
Organism
nau
Nicotiana attenuata (coyote tobacco)
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109208435
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109208435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3730
Motif
Other DBs
NCBI-GeneID:
109208435
NCBI-ProteinID:
XP_019227084
UniProt:
A0A314KQU4
LinkDB
All DBs
Position
Unknown
AA seq
1895 aa
AA seq
DB search
MDSYTQLLEKIRIPQPSLQKFAVISIFEKLRSAPPHLDSDSGPGTDAITQCLHSTSASVL
DQSVRELCRLVRDSKLDISRGLLELQSALEGSDSRFVNLFVKGIGFLVRLGFQKNSLRFL
ASEAHPFVKVLSCRLEVQTELVQQVIIFIVQSKHLGMVEACEFLVPVLNYSIVRMPSSVS
VSSFIRSLISSLAGLCCSIPGEAIPIIELLTGRLKFFPCNNSEDFTNISHCLECIVDAYV
VVLQRLVEMGSLLHEAQLCGVELLDAMLCMNPKHTSSVENILEVSRRILIAQKDLGFGYV
PELSTITLSLFMILVQSELEHEQFLAVKLILFLLKWKYENEHDVQRDAYDLNEELLFIFP
AISLLSSPSKIVKQAATDLLHILGKLSNKLLIAQKTGQPNAMKFPSISTPKYIVFRLLQH
LWLQDLSPLSGSFYPNYVPGYDTSIKDKNYISKTWSSLVTDHMHHIIARRKSLSISQSQE
IFPTNMPMIFSAVACVLLTHQTYGSSSVDILSNSSNVDPTLGVPLLLVIQFYNHIFSTNT
GADCHGVLLKLLEMLPLLASHPAIIPLIIQTLLPMLQNDKKPVLFATAIRLLCKTWELND
RVFGTLQGVLLADRFTRFASQRDICISMAVSICDICRRNPDRGVDLILSIAACIEKQDPL
IQSLGLQSLSHLCEADAIDFYSAWDVIAKHVLNYSANAMVAHSLCLLLTWGAMDAQAYPE
ASVHVLKILWDIGTSQDFRQASLWSKARASAFVALASYEVEHLERSIPDFKDKNLEFLVS
ETDPEVLTAVEGFEVKILTFEHTTRRRLVKQKRVSANKIEKLLDVFPRLIFASERREKEL
PGAALFCLSFTKKDSRKAGAAEDLQDVQAKYEASLVDIATSLQLSRNILIAILSLQSWKP
FMRRWMRAHILLLDAKLQTAVLDKAPKAAMEILKSMIAIAERMLPRSAENIALAVGALCL
VLPASAHVVKATASKFLLDWLSQHEHEYRQWSAAISLGVISSCLHLTDHKQKFENINALL
EVASVSKSTLVKGACGAGLGFSCQALLARADADDNAHLGKATYKIEEVDLLRKIIRTLSQ
LICQVTPSSADVLETLSLSFPLDSDNLNSEISGFLGSTSENLEEDVWGIAGLVLGLGNCI
GAMYRAGIHSAVLNVKSLLISWIPHPTEVTAMSKNHEILLSVGSCLSVPIVIAMCQRFEL
TDDADMEYLLGCYKELISELLSVKRFDTFHQSLLMASCLGAGSLIGVVLNEGLHPLKIEH
IKELLLLFRKSYSDSNPPLIHLGAMLGVVNALGAGAGTLVEPHPLRSSHAASDQKESSYI
SSPLITNTVLEPELTSLVQEIFLVAQNYDAHQLQQHAAWAISFLRQHLWFKEPQNDETTA
ENDSAGLKTVLHSFPEDSTVMKLSLWLMHLNYLGTDAVSHVNTVSSVLRCLSHASRLPPL
DWGAIIRRCMRYEGQVAGLLTQDISFERGNLRGECLLFSLSHAKQFDPLLSFLDEQCDIP
RLRMLEPRLQFFLLSHLADLVKIFSGSRVVKLFEDVANLLSTSICSESCDSLEKSSFRIS
CWRGLKLCLDESSHHTQEYKSSMEKCMELLFTSLPSAHTEGLCQGKILEEWCEAIRCLEK
AQQEWLLDLLKVSEVNVADADSLSFETVRKIQAKAKLVQSGSLPLTVLGKLKTYLLDCRS
QDIWDALTEVSITVQHAEGSAKRQWLIEALEISCVTRFPSTALQFIGLLCGSCCVYRPVL
IADKFTVLSDLPVTLTSLLSDSTWMVVADAVVSCLWKSTERIYKWNKQLKGGGDYSLYTQ
PVDASENDLACFLLLVMHQACVSLKDHLPPEKQLQLANMVVPSNMDARELHARLNYNVKS
LPRFEPLTNSFQWTAKQNVSLNLSPCCHEYSRIGG
NT seq
5688 nt
NT seq
+upstream
nt +downstream
nt
atggactcttacactcaactactggagaaaattcgaatccctcaaccatcactgcaaaaa
ttcgcagtcatctcgatcttcgagaagcttcgatcggctccgccgcacttggactccgac
tccggccctggaacagacgctattactcagtgccttcattccacctcagcttctgtcctt
gatcaatccgttcgagaattgtgccgcctcgtcagagactccaaattggacatctctcgc
gggttactggagctgcagtctgctctcgaaggttcagattcacgcttcgtcaaccttttc
gtcaaaggcatagggtttctcgtccggttagggttccagaagaactctttgcggtttcta
gcttcagaggctcatccatttgtcaaggttctttcttgtcgcttggaggttcagacggag
ctagtgcaacaagtgattatttttatagtgcaaagcaaacatttgggaatggtggaagcc
tgtgaattcttggtacctgtcttgaattattcaattgttaggatgccctcctctgtatca
gtttcttcatttataagaagtttgatatcgtcattagctggactttgttgttcgattcct
ggggaggccattcctattattgagctcctcactgggcgtttgaagttctttccatgcaat
aattcagaagattttactaatatttcacactgccttgaatgcattgtagatgcatatgtg
gtggtcttgcaacgattggtggaaatgggatcgctgcttcacgaagctcagttatgtggt
gtggagctactggatgctatgttgtgtatgaatccaaagcacacgagttcagttgagaac
attttagaagtatcaaggcgcatattgattgcgcaaaaagatcttggtttcggttatgtg
cctgaattatcaaccattacgctgtccttgtttatgatacttgtgcagtctgaacttgaa
cacgaacagttcttggcggtgaaacttatcctatttctgttgaagtggaaatatgagaat
gagcatgatgtccagagagatgcatatgatttgaatgaagagctcttattcatcttccct
gctatcagccttctttcttctccatctaaaatagtaaaacaagctgcaaccgatttgctt
catattttgggaaagctttcgaataagctacttattgcacaaaagaccggacagccaaat
gcaatgaaatttccttccattagtacacccaagtacatagtcttcagactcttgcagcac
ttgtggcttcaggacctatctccattatctggttctttttatccgaattatgtgcctggt
tatgacacttccattaaagacaagaactatatatcaaaaacttggagctccttggtaacc
gaccacatgcatcacatcattgcaagaagaaagtccttatccatctcacagtctcaggag
atctttccgaccaatatgcccatgatattcagtgcggttgcctgtgtcctcctcacgcat
caaacatatggaagctcttctgttgatatcttgtctaatagcagcaatgtggatcctaca
cttggtgtccctttgttgctggtcattcagttctacaaccatatattttccacgaacaca
ggtgctgattgtcatggagttctgctaaaacttctggaaatgctaccgttacttgcgtct
catcctgcaatcatacctctcattattcagacactgttgcctatgcttcagaatgataag
aaacccgttctatttgccactgcaattcgtctactttgcaagacctgggagctcaatgac
cgtgtctttgggaccttgcagggagtactacttgcagatagatttactcggtttgcatct
cagagagatatctgcattagtatggctgtttccatttgtgatatctgcagaagaaatcct
gatcgtggagtggaccttattttatctattgcggcttgtatcgagaaacaagatccatta
attcagtctctgggtctccaaagccttagccacctctgtgaagcggacgccattgatttt
tattctgcctgggatgtgattgcaaagcatgtgctaaactactcagcaaacgccatggtt
gctcacagcctctgtcttcttttgacatggggtgcgatggatgctcaagcataccctgaa
gcatcagtacatgtgttgaagatactatgggatattggaacctcccaagacttcagacag
gcttccttatggtccaaagctcgggcatctgcctttgtggcattagccagttatgaggta
gagcatctcgaaagaagtattccagatttcaaggacaaaaatttggagtttcttgtgtcc
gagactgaccctgaagtgcttactgctgtggaaggatttgaagtcaaaattttaactttt
gagcacaccacccgtcgaagattagtaaaacagaaaagggtgtctgccaacaaaattgag
aagctgttagatgtcttcccgcgtctcatcttcgcttcagaaagaagagaaaaagaatta
cctggtgcggctcttttttgcctttccttcacaaagaaagattcaaggaaggcaggagca
gcagaggacttgcaagatgtacaagctaaatatgaggcctcactggtcgatatagcaaca
tctcttcaactatcaagaaatatattgattgcaattctttctttgcaatcatggaagccc
ttcatgcggaggtggatgagagcccatatcttgttacttgatgctaagttgcagactgct
gttctggacaaagctcctaaagctgctatggaaattctgaagagtatgatagcaattgca
gagagaatgctccctcgatctgctgagaatatcgcattagctgttggagccctttgtttg
gtgctgcccgcttctgcgcatgttgttaaagcgaccgcctcgaagtttttgctggattgg
ttgtcccaacatgaacatgagtatcgccagtggtcagcagcaatctctcttggtgtgata
tcaagttgcctacacctcactgatcacaagcagaaatttgagaatatcaatgcactgctt
gaggttgcatctgtgagcaaaagcacacttgtgaaaggagcttgtggagctggattaggt
ttttcatgtcaagctcttcttgccagagctgatgctgatgataatgctcacctgggcaaa
gcgacatacaagatagaggaagtagacttgttgagaaagatcatcaggaccttatcccag
ttgatctgtcaagtcacaccttcttcagcagatgttcttgaaactctatcgctatctttt
cctcttgactcagataatctgaattcagagatttctggttttcttggttcgaccagcgag
aatttagaggaagatgtgtggggcattgctgggcttgtattgggtttgggtaattgtatt
ggtgcaatgtacagagctgggattcatagtgctgttctcaatgtgaaatccttacttatt
tcgtggattccacaccctactgaagttaccgctatgagcaaaaatcacgaaatcttatta
tctgtgggctcgtgtctttctgtacctattgtaattgccatgtgtcagaggtttgaactt
actgatgatgcagatatggaatatctattgggttgctataaggaacttatctctgagcta
ctctctgttaaaagatttgacaccttccaccagagcttattgatggcatcttgtttgggg
gcaggaagccttattggtgtggttttgaatgaagggttgcaccctttgaaaattgaacac
attaaagaattgcttttgttgttcagaaaaagttactctgactccaatcctcctcttatt
catctgggtgccatgcttggtgttgtaaatgcattaggagcaggtgcagggacactggtt
gaaccccaccctttgcgctcatcacatgctgcttctgatcagaaggaatcttcttatata
tctagtcctttaattacaaatactgttcttgagcctgagttaacttcactagtacaagag
atattcctagttgcgcaaaattatgatgctcatcagttacagcagcatgcggcatgggca
atttcttttcttagacagcatttgtggttcaaagaacctcaaaatgatgaaaccaccgca
gagaatgattctgctggattgaagactgtcttacatagttttcccgaggacagcactgtc
atgaaattgtctttgtggctaatgcatctgaactatctcgggacagatgctgtttcacat
gtaaacacagtttctagtgttctgcggtgtctttcacatgcttctaggctaccaccattg
gattggggagcaatcatcagacggtgcatgagatatgagggtcaagttgctggcttgttg
acgcaagacataagttttgagagaggaaatctcaggggggaatgcttacttttctcatta
tcacatgctaagcaatttgatcctctccttagcttccttgatgagcaatgtgacatccct
cggttgaggatgcttgagcctcgtctgcaattctttttgctttcacatttggcagatcta
gttaagattttctcaggttctcgggtcgtgaaattatttgaagatgttgctaacttattg
tcaacgtctatttgttctgagagttgtgactccttagagaaaagctcatttaggatttcg
tgctggaggggacttaagctgtgtttggatgaatcttctcatcatactcaagagtataaa
tctagcatggaaaaatgcatggagttgctctttacgtcactgccttcagctcatactgaa
gggctatgtcagggtaaaattcttgaagaatggtgtgaagcaattagatgtctcgagaag
gctcaacaagaatggctattggatcttctaaaggtttcagaggtgaacgtcgccgacgca
gactctctctcgtttgaaactgtgagaaagattcaagcaaaagcaaaactagttcaaagt
ggttccctgccattgacagtgcttggtaaactgaaaacttatcttttggactgcagatct
caagatatctgggatgctctaactgaagtttcaataactgtacaacatgctgaagggagt
gccaaaagacaatggctcattgaggcactggaaattagttgtgtgacaagatttccctcc
acggctctgcagttcatcggcctgctatgtggcagctgctgcgtatataggcctgtgtta
attgcggacaaattcactgttttaagcgacttgccagtcacgctcacatccctcctctct
gatagtacgtggatggtagtagcagatgctgttgtttcttgtttgtggaagtcgacagag
cggatatataagtggaacaaacaattaaaaggtggtggtgattattcactttatacacag
cccgttgacgcgagtgaaaatgatttagcctgctttctcctactagtgatgcatcaagca
tgtgtctctttgaaagaccatctgcctccagagaagcagcttcaacttgccaacatggtg
gtaccgtcaaatatggatgcccgtgagttacacgcaaggttaaattacaatgtgaagagt
ctacctcgctttgagcccttgactaattcatttcaatggacggcaaagcagaatgtgtct
ctgaacctcagtccgtgctgtcatgaatattccaggataggcggctaa
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