Nicotiana attenuata (coyote tobacco): 109208515
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Entry
109208515 CDS
T05870
Name
(RefSeq) DNA mismatch repair protein MSH3 isoform X1
KO
K08736
DNA mismatch repair protein MSH3
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
109208515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nau03400
]
109208515
DNA repair and recombination proteins [BR:
nau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
109208515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Motif
Other DBs
NCBI-GeneID:
109208515
NCBI-ProteinID:
XP_019227186
LinkDB
All DBs
Position
Unknown
AA seq
1148 aa
AA seq
DB search
MGKPKQQVISRFFAPKPKNEKDPLTSTSTSTPPCTPPPKITTTVTFSPAKRLRTSQLTSP
PSTKHTKIPKLSPHVHNQPPPLPNPTLHQRFLDKLLEPSIDRLEPSKCYDIRNPKYTPLE
QQVVELKAKYPDILLMVEVGYKYRFFGQDAENAARVLGIYAHMDHNFLTASVPTFRLNVH
VRRLVNAGYKVGVVKQTETAAIKAHGSNKLGPFGRELSALYTKATLEASEDVGGGDEGFG
SCNNYLVCVVEKGIEDVDFGIEGCRGNDVKIGVVGVEVSTGDVVYGEFNDNFMRAGLEAL
ILNLLPAELLVGRPISKQSEKLLLAYAGPASNVRVEDVSSDQFSDGGALAEVMSLYEGMQ
ENYLLNVQEREEAEVKMHEQNRIAIQGIMVMPGLAIQALALIIRHLKQFGLERILCLGAS
FRPFSGNMEMTLSANALQQLEVLKNNFDGSESGSLLHCMNQTLTIFGSRLLRHWVTHPLC
DRNMIGARLDAVSEIAESMKTYRTSHTSVLEVEGADVTILQPEIHHIISSVLSTLGRSPD
IQRGITRIFHKKATASEFIAVIQAILTAAKQLQQLWIEEYKSTNLQRETLRSVLLRKLIS
IASSSTVINAAAKFLSALNKEAADRRDLHNLFFISDGKFPEVAEGTRRVELANEKLDSLI
VVYRKQLHIRNLEYMSVAGITHLIELPLDTKVPPDWVKVNSTKKAIRYHPPEVLVALDEL
ALANEQLTVVCQAAWNNFLTRFGGYFAEFQAAVQALASLDCLNSLAILSRNKNYVRPLFV
KDDEAVQIHIFSGRHPVLERVLQENFVPNDTDLHAEREYCQIVTGPNMGGKSCYIRQVAL
ITLMAQVGSFVPAFSAKLHVLDGIYTRMGASDSIQQGRSTFLEELSEASEILKKCSASSL
VILDELGRGTSTHDGVAIAYATLQYLLEHKKCMILFVTHYPEIVSIKNEYPGSVGPYHVS
YLTSQREVNGDFKPNEKMDHINSEDITYLYKLAPGVCERSFGFKVAQLAQLPVACIQRAI
VIAGRLEAAVSNYTAQNRTRRSSSISYSKDGCKVSEPVEYVLEPDCLSAGRVENLDDMSE
LYREFFLNLSFALLEEHDDDRKLQFLMQARSLAAQLINFRLLKYLETPPIRRSSSDKAQT
SRTSWSWV
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaaccaaaacaacaagtaatttcccgcttctttgcaccaaaaccaaagaacgaa
aaagaccctttaacttcaacttcaacctcaactcctccctgtactccacctcccaaaatt
actaccaccgtcaccttttcacctgcaaaacgcctcagaacttctcaactcacttctcct
ccttccacaaaacacaccaaaatccctaagctatcacctcacgtacacaaccaaccccct
cctcttcctaaccccactctccaccagaggttcctggataaacttctagaaccatctatc
gaccgtctggaaccttccaaatgttatgatattcgaaaccccaagtacacaccattagag
caacaagttgtggagcttaaggccaagtatccagacattttattgatggtcgaagttggt
tataagtacagattttttggtcaggatgcagaaaatgctgctagggttttaggaatttat
gcacatatggatcacaatttcttaacagctagtgtaccgacttttcggttgaatgtccat
gtaaggaggctggtgaatgcaggatacaaagttggtgttgttaaacaaacggagactgct
gcaattaaggcacatggctcaaataaattgggcccttttggccgtgagttatcagcattg
tacacgaaagctactctggaggcttcggaagatgtagggggtggagatgaggggtttggg
tcatgtaataactatttggtttgtgttgtcgagaagggaatcgaggatgttgattttggg
attgagggttgtagggggaatgatgtgaaaatcggggttgttggggttgaggtttcgacc
ggggatgttgtttatggggagtttaatgataattttatgagggccgggttggaggcattg
atcctcaacttgttgccagctgaattgcttgttggcaggcctatatctaagcagtcagag
aagctgctactggcttatgctggaccggcatctaatgttcgggtggaggatgtatcatca
gaccagttcagtgatggcggtgctcttgctgaagtgatgtctctatatgagggcatgcag
gaaaattatttgttaaatgtccaagaaagggaagaggctgaggtgaaaatgcacgaacag
aatcgaattgcaatccagggaattatggtaatgcctggtctggctatacaagcattggcc
ttaattattagacatctaaaacagtttggtttggaaagaattctgtgcttgggagcttca
tttcgtcccttctctggcaacatggagatgaccctttcagccaatgcactgcagcaactt
gaggttttgaagaataattttgacggatctgagtctggctccttactgcattgtatgaat
cagacacttaccatatttggttcaaggcttctcaggcattgggtgactcatcctttatgt
gatagaaacatgataggtgctcgtcttgacgcagtctcagagattgcagaatctatgaaa
acttatcgaacttctcatacttctgtcttagaggtggaaggtgctgatgttaccattttg
caaccagagatacatcatataatttcttcagttctgtccactctgggaaggtcaccagat
atccaacgcgggattacaagaatttttcacaaaaaagctaccgcatctgagtttattgca
gtcattcaagctatcttgactgctgcaaaacaacttcagcagctttggatagaagagtat
aaaagtacgaatctacaaagagagaccttgcgctcagtactgttgagaaagttaatatca
attgcctcatcgtctactgttattaatgctgctgcaaagtttttgtctgctttaaacaag
gaagccgctgacagacgagatcttcacaatttattcttcatttctgacggaaagttccct
gaggttgctgaaggtacaaggagagttgagttggcaaatgagaagttagactcattaatt
gttgtgtatcgcaagcagcttcatatccgcaatttggagtacatgagtgtagctggaatt
acacatttgatagagctgcctctagacacaaaggtgccgccagattgggtgaaagtgaac
agtactaagaaagcaatacgctatcatccaccagaagtattggtggctttagatgaatta
gcattggcaaatgagcagctcactgtcgtttgccaagctgcttggaataattttttaacg
aggtttggtggatactttgctgagttccaagctgctgtgcaggccctggcttcattggat
tgtctaaattctcttgccattctttcgaggaataagaattatgtccgtccactttttgtg
aaagatgatgaggctgttcagatacatattttctctggtcgtcacccggttttggagaga
gtattacaagagaactttgtcccaaatgatacagatttgcatgcagaaagagagtattgt
cagattgttactggaccaaatatgggaggaaaaagctgctatattcgccaagttgctctc
atcactttgatggctcaggttggatcctttgttccagcgttctctgcaaaactgcatgtg
ctagatggcatatatactcgcatgggtgcatccgacagtatacagcaaggaagaagtaca
ttcttagaagaactcagcgaggcttctgaaatactgaaaaaatgctcagccagctcattg
gttatacttgatgaacttgggagaggtaccagtacacatgacggcgtagcaattgcttat
gcaacacttcagtatctcctagaacacaagaaatgcatgattctatttgtcacccattac
cctgaaattgtcagtatcaagaatgaatatccaggctctgtgggaccataccatgtgtca
tatctgacatcccaaagagaagtgaatggggatttcaagccaaatgagaagatggatcac
atcaatagtgaagacatcacctacctttacaaacttgcaccaggggtctgcgagagaagt
tttggttttaaagttgctcagcttgcacaactgccggttgcgtgtattcaacgagccatt
gtaatagctggaagactagaagcagcagtctctaactacacagcgcaaaatcgaactaga
aggagctcttcgataagttatagcaaagatggttgtaaagtatctgaaccagtggagtat
gtcttagaacctgattgcttgtctgctggaagagttgaaaacttagatgatatgagcgag
ctttacagggagttctttctgaacctaagcttcgcacttcttgaagaacatgatgatgac
aggaagctccagtttctaatgcaggctagaagccttgctgctcagttaataaactttagg
ctcttaaaataccttgaaacgcctccaattaggcgtagctcgagtgacaaagctcagacc
tcaaggacttcatggtcctgggtttga
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