Nicotiana attenuata (coyote tobacco): 109208556
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Entry
109208556 CDS
T05870
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109208556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109208556
03012 Translation factors [BR:
nau03012
]
109208556
Enzymes [BR:
nau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109208556
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109208556
Translation factors [BR:
nau03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109208556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
nSTAND3
Dicer_dimer
AAA_22
AAA_19
ATPase
TFIIA
T2SSE
ABC_tran
AAA_11
PhoH
Sigma54_activat
Myosin_head
Motif
Other DBs
NCBI-GeneID:
109208556
NCBI-ProteinID:
XP_019227226
LinkDB
All DBs
Position
Unknown
AA seq
1183 aa
AA seq
DB search
MSLYSFQFFSHYRTLIKPLSIPPPPLSLTMRDRPPPPSSVYVPPHQRLLRSVITAVPPQS
GGFRSTAIDPKPIPNAQQQIQQPQQMRVMQQKRTSRFDEVLLTQEVSACDIDLTPYQGAA
ISDNTEAWKWKLTALLRDKDKQEVLSREKKDRRDYEQIAALASKMGLYSNLYSRVVVVSK
LPLPNYRFDLDDKRPQREVILPPGLPRRIDSFLGEYLSHKPTSVAVLSRSSSNGSIATDE
GLFEQPELFPQSKAFMENILWRRSMQMRAEQQTWQESPEGRKMLEFRGSLPAYKEKEAIL
SVISQNQVVIISGETGCGKTTQIPQFILESEIESARGAMCSIICTQPRRISAMTVSERIA
AERGELLGETVGYKVRLEGVKGRDTHLLFCTTGILLRRLLIDRNLKGITHVIVDEIHERG
INEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFGGAPLVHIPGFTYPVRTHFLEN
ILEMSGYRLTPDNQIDDYGQERTWKMNKQAPRKRKSQIASAVEDALRAADFKEFSPVTRE
SLSCWNPDCIGFNLIEHILCHICENERPGAVLVFMTGWDDINSLKDKLQCHPILGNTSRV
LLLACHGSMASTEQRLIFDKPEDGVRKIVLATNIAETSITIDDIVYVIDCGKAKETSYDA
LNNTPCLLPTWISKVSARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPEILRTPLQSL
CLQIKSLKLGSISEFLSRALQSPELLAVQKAIEYLKIIGALDESENLTVLGRYLTMLPME
PKLGKMLILGATLNCLEPILTIVAGLSVRDPFLTPLDKKDLADAAKANFSRDYSDHLALV
RAYEGWRDAERDLAGYEYCWKNFLSAQSMKAIDSLRREFYSLLKDTGLVDSNNTIYNSWS
YDEHLLRAIICYGLYPGICSVLHNEKSFSLKTMEDGQVLLHSNSINARDSRIPYPWLIFN
EKIKVNSVFLRDSTAISDSVLLLFGGTISEGEVDGHLKMLGGYLEFFMSPTIAEMYRSLR
RELDELIHTKLLNPRMDVHSYHELLSAIRLLISEDQCGGRFVFSRQVLVTSKPCAAAAPP
APMSRTESGPGGENSKSQLQTLLNRAGYATPTYKTRQLNNNQFQATVEFNGMQIMGQPCN
NKKQAEKDAAAEALQWLLEGHCAGPDYIERMSLFLKKSKTEHR
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgagcctatattctttccaatttttctcacattacagaacccttattaaacccttgagc
attccaccaccgccgttgtcgttgacgatgagggaccgaccgccgccgccatcatccgtt
tacgtccctccacatcaacgcctcctccgttcagtaatcactgctgttccgccacaatcc
ggcggcttccgttctacagcaatcgatcccaagcctattccgaacgctcagcagcaaatt
cagcagccacaacaaatgcgagtgatgcaacagaagagaacttcacgatttgatgaggtt
ttacttactcaggaagtttccgcttgtgatatcgaccttacaccctatcagggtgctgcc
atatctgacaacactgaagcatggaaatggaagctcactgctctgttacgcgacaaggat
aaacaagaggtgctctcaagggagaaaaaggataggcgtgattatgagcaaatagcagct
ttagcgagcaaaatgggtttatatagtaacctatattcaagagtagttgttgtcagcaag
cttccattaccaaactacaggtttgatttggatgataagcgccctcagagagaggtgatc
ttgcctccgggtttgccaagacgaatagattcttttcttggagaatacttgtctcataag
ccaacgagcgtggctgtactttcacgatcaagcagtaatggcagtatagctaccgatgag
ggtctatttgagcagccagagttattccctcaaagtaaggctttcatggagaacatcctt
tggcgtaggagcatgcaaatgcgagctgagcagcaaacttggcaggaatcaccagaaggt
aggaagatgctggaatttcgtggtagtctacctgcatataaggaaaaagaagcaatatta
agtgtcatttcacaaaaccaggtggttattatctcaggtgaaactggctgtgggaagacc
acacagattccccaatttattttagagtctgaaattgagtctgctcgcggagccatgtgc
agtatcatatgtactcagccaagaagaatatctgctatgactgtatccgaaagaattgct
gcagagagaggggagttgttgggtgaaacagttggatataaagtgaggctagaaggtgtt
aaagggagggatactcacctcctcttctgtaccactggtatcttgttgagaagactacta
attgacagaaatctgaagggcatcacacatgtaattgtggacgagattcatgaacgtgga
ataaatgaagattttctgctaatagttctaaaggatttactccctcgccgaccagagtta
aggttgattttgatgagtgccaccttagatgcagagcttttctcttcatactttggtggg
gctccgcttgtccacattccgggatttacatatcccgttcgcactcatttcctcgaaaat
attttggagatgtcgggatacagattgacaccagacaatcagattgatgattatggtcag
gagagaacgtggaaaatgaacaagcaagctccaagaaaaaggaagagccagattgcttct
gctgttgaggatgccctcagagctgctgatttcaaagaatttagccctgtgacacgcgag
tctttgtcctgttggaatcctgattgtataggcttcaatcttatagaacatattctatgc
catatttgtgaaaatgaaaggcctggtgctgttttagtttttatgactggttgggatgat
ataaattctctgaaggataagctacaatgtcatcctatcttgggaaataccagccgtgtt
ttattgctggcatgccatggttctatggctagtacggagcagaggttaatatttgacaag
cctgaagatggagtgaggaagatagtgttggctacaaatattgctgaaaccagtatcaca
atcgatgacatagtttatgttattgactgtggcaaggcaaaagagacgtcatatgatgca
cttaataatactccttgtttgcttcctacttggatttcaaaggtttcagctcgacaaaga
aggggaagagccggacgtgttcagcctggagaatgctatcatctttatcccagatgtgtg
tatgatgcttttgctgattatcaattaccagaaattctgagaacccctttgcaatctctt
tgtttgcaaattaaaagtttaaaactcggtagcatctctgagttcctttcaagggctttg
caatcccccgagttattagcggttcaaaaagctattgagtatctgaaaattattggggct
ttagatgagagtgaaaatttgactgttctaggacgttacttaacaatgcttccaatggag
cctaaactcggaaaaatgcttatacttggtgcaactttgaattgtttggagccgatatta
actatcgttgctggtcttagtgtccgagatcccttcttgacaccgcttgacaagaaagat
cttgcagacgctgctaaggctaatttttcacgcgattatagtgaccatcttgctcttgtt
cgagcgtatgagggctggagggatgctgaaagagacctagctggatatgagtactgctgg
aagaattttctgtctgcacagtctatgaaagctattgattctcttcgcagggagttttac
tctttgctgaaggatactggtcttgttgacagcaataataccatctataattcttggagt
tatgatgagcacctccttcgagcaattatctgctatgggttgtatcctggaatctgttct
gtcctgcataatgaaaagtcattttcgttgaaaacaatggaagatggtcaggtgctttta
cactcgaactccattaatgcccgggactccaggataccatatccctggctgattttcaat
gaaaagatcaaagtaaactctgtctttctgcgggattccacagctatctccgattcagtg
ctgcttctatttggaggaaccatctcagaaggggaagtggacggtcacttgaaaatgtta
ggtggatacttagagttctttatgagccccactatagcagaaatgtatagaagtctaaga
agagagcttgatgagttaattcatactaaactcctgaatcctaggatggatgtacatagt
tatcatgaacttctgtcagcaatacggttgcttatctcagaggatcaatgcggtggcaga
tttgtttttagtcgtcaggttttagtaacttccaagccatgtgctgcagcagctccacca
gctccgatgtcaaggacagaaagtggtcccgggggtgaaaattctaagtctcagctacag
acgttgctgaatcgagcagggtatgcaacaccaacctacaagacaaggcaacttaataac
aatcagtttcaagcaactgtagagttcaatgggatgcagataatgggacagccttgcaac
aacaaaaaacaagctgaaaaagatgcagcagctgaggctctgcaatggttgttggaaggg
cactgtgcaggtcccgattacattgagcggatgtctctgtttctgaaaaagagcaagaca
gagcatagatga
DBGET
integrated database retrieval system
