KEGG   Nicotiana attenuata (coyote tobacco): 109210676
Entry
109210676         CDS       T05870                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
nau  Nicotiana attenuata (coyote tobacco)
Brite
KEGG Orthology (KO) [BR:nau00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:nau03009]
    109210676
Ribosome biogenesis [BR:nau03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    109210676
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_EML Beta-prop_TEP1_2nd EIF3I NBCH_WD40 WDR55 Beta-prop_TEP1_C Beta-prop_HPS5 Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_Vps41 Beta-prop_VPS8 ANAPC4_WD40 Beta-prop_IP5PC_F Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_WDR19_1st WDR54 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_BBS7 Beta-prop_SCAP Beta-prop_LRRK2 PEP5_VPS11_N Beta-prop_SPT8 Beta-prop_DCAF12 VPS11_N Beta-prop_WDR19_2nd DUF4987 PROPPIN VPS8_N
Other DBs
NCBI-GeneID: 109210676
NCBI-ProteinID: XP_019229675
LinkDB
Position
2:56130454..56141064
AA seq 449 aa
MTELELVIASSPTDAGIGCWDLHTGAEHLRYRSCSSPSHGLVCVGGRFLASSQLCATKSS
SGSVLYWSWNKPQVEVKSFPAEPISPLVCNNEGTYMAGGGASGDIYLWQVATGKLLKKWH
AHYRAVTCLKFNDDQSLLISGSEDGSVRVWSLIMVFDDLLREKARQPYEYSFSEHSLKVT
DVVTGYGGANAIVVSASEDRTCKVWSLSRGKLLRNIVFPSVIDAIALDPGEDVFYAGGRD
GKIYIAALNAVADSNSNYGLHILGFLSEQSKAITCLALTTDGGLLISGSEDGMVRVWNTK
DHNIARIFRHAKGPVNNIVVVRQPSLLSTRGSVNSQGPSVKRHGVSLPPPLEKYANSADD
NDYVAVIGPRVNPDRSVEASYISVQTLNNQILELQRQGSSAAAQMEIEKLKLDRSRSIQM
IQQWEKKYQNLHQFCVTELLDGEPAGNAE
NT seq 1350 nt   +upstreamnt  +downstreamnt
atgacggagctggaattggtaatcgcgtcgtcgccgaccgacgccggtatcggctgttgg
gacctccatactggcgccgagcaccttcgttatcggtcttgctcctccccctcccacggc
cttgtctgtgtcggcggccgctttctcgcctcctctcaactctgtgctaccaaatcgtcg
tcaggctctgtcctttactggtcctggaacaagcctcaagttgaagttaaaagctttcca
gcggaacctataagtccacttgtttgcaacaatgagggaacttatatggccggaggaggt
gcatccggtgatatatacttgtggcaggttgcgactggtaaactacttaagaagtggcat
gctcactatagggcagttacttgcttgaaattcaatgacgatcaatcacttctgatttct
ggttcagaggatggatctgttcgagtttggtctcttataatggtatttgatgatttgttg
agggagaaagcaagacagccttacgagtatagtttctctgagcattctttgaaggtgact
gatgttgtgactgggtatggcggagctaatgcaattgttgtatctgcttcagaagataga
acatgcaaggtatggagcttgtcgagaggaaaattgttgagaaacattgtgtttccatca
gtaattgatgcaattgcattggaccctggtgaagatgtcttctatgctggtggtagagat
gggaaaatatacattgctgcactaaatgctgttgctgactccaacagtaattacggattg
cacattcttggttttttgtctgagcaaagtaaggctattacatgcttagcattaactacg
gacgggggcttgctaatttctggatcagaggatggcatggttcgggtgtggaacactaaa
gaccataacatcgcccgaatttttaggcatgcaaaaggcccagttaacaatattgttgtt
gttagacaaccatctctcctgagtaccagaggatctgtgaattcccaagggccgtccgta
aagagacatggggtatcattaccacccccattggaaaagtatgctaactcagcagatgat
aatgattatgtggcagtaattggcccccgggtcaatcctgatagatctgttgaagcttca
tatatcagtgttcagacactaaataatcaaatcttagagcttcagagacaagggtcttct
gctgctgctcaaatggagatcgaaaagctaaaactcgaccgcagcaggtccatacaaatg
attcagcaatgggaaaagaagtatcaaaatctacatcagttttgtgtaaccgagctattg
gatggggaaccagctggaaatgctgagtga

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