Nicotiana attenuata (coyote tobacco): 109211865
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Entry
109211865 CDS
T05870
Name
(RefSeq) probable pectate lyase 13 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau00040
Pentose and glucuronate interconversions
nau01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
109211865
Enzymes [BR:
nau01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
109211865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
WSS_VP
NosD
Motif
Other DBs
NCBI-GeneID:
109211865
NCBI-ProteinID:
XP_019230998
UniProt:
A0A314KIN3
LinkDB
All DBs
Position
Unknown
AA seq
490 aa
AA seq
DB search
MLSAICILLFCFLISFFPLITASLNLTLPYQHPYPEAVVQELQSKVNESISRRQLLDTTI
NAQCQTGNPIDDCWRCDSNWASNRQRLADCAIGFGQGAIGGRNGKIYVVTDSSDRDIVNP
TPGTLRHAVIQDEPLWIIFSADMFIKLKHELIVNSYKTIDGRGAKVHITGNGCITLQYIS
NVIIHNVHIYNCRPSGNTNIRSTPTHVGHRGRSDGDGISIFGSRNIWIDHCALSHCTDGL
IDAIMGSTAITISNNYFTHHDEVMLLGHDDRYLPDSGMQVTIAFNHFGVGLVQRMPRCRR
GYIHVVNNDFTEWQMYAIGGSANPTINSQGNRYMAPVDPNAKEVTKRVETDEREWSDWNW
RTDGDVMVNGAFFVPSGDGLSNQYAKASSVEPKSAVLIDQLTLNAGVFGAPRDNSISISY
GGGTTTGASGSGGAGSTGGSDSDFFGMIFGSGAPAKLSPSTILLSHLIILVLYITTNHSG
QLSSQLLHLL
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgctttctgctatttgcattctcttattctgtttcttaatctcatttttcccactaatt
acagcttcccttaatctcaccctcccctatcaacacccttaccctgaagctgtggttcaa
gaactacaaagtaaggtgaatgagtccatatcaagaagacaactgttagacacaaccata
aatgcacaatgtcaaacggggaacccaatagacgattgctggcgctgcgactcaaactgg
gccagcaatcgtcaacgtttagcagattgcgccataggcttcggtcagggcgcaatcgga
ggaagaaatggcaagatttatgttgtcaccgattcctccgacagagatattgtcaaccca
acgccggggactctccggcacgcggtaatccaagacgaaccgctctggataattttctca
gccgacatgtttattaaattaaaacatgaacttatcgtaaatagttacaaaacaatcgac
ggtcgtggtgcaaaagtacacattacgggcaatgggtgtataacgttacaatatattagt
aatgttattatacacaatgttcatatttacaattgtcgtccttcgggaaatactaatata
cgttcgaccccgactcacgttgggcatagaggaagatcagacggtgatggaatttctata
tttggatcgcgaaatatatggattgatcattgtgcattgtcgcattgtaccgacggctta
attgatgctatcatggggtccactgcgattactatatctaacaactatttcactcaccat
gatgaagttatgctcttgggacatgatgatagatatttgcccgactccggaatgcaggtt
acaatagcgttcaatcattttggagtaggattagtacagagaatgccaaggtgtagaaga
ggatatatacatgtagtgaacaatgattttacagaatggcaaatgtatgcaattggagga
agtgctaatcctactattaatagtcaaggcaatcgttatatggcgccagtggatccaaat
gctaaagaggtgacaaagcgcgtggaaacagacgagcgggagtggagtgactggaactgg
agaacagacggggacgtaatggtaaatggagcatttttcgtgccatcaggtgacgggctg
agcaaccaatacgcgaaggcctcgagcgtggagcccaaatccgccgttcttattgatcaa
ctcaccctcaacgccggtgtttttggtgccccgagggataatagtattagcatatcatat
ggaggtgggaccaccaccggagctagcgggagcggcggtgccgggtccaccggcggcagc
gatagtgacttctttggaatgatatttgggagcggcgcaccagcaaaattatcaccatct
actattctattgtctcatttaattattttagttttgtacattaccaccaaccatagtggg
caattatcatcacaattattacacttactatag
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