Nicotiana attenuata (coyote tobacco): 109212694
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Entry
109212694 CDS
T05870
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03013
Nucleocytoplasmic transport
nau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109212694
03015 mRNA surveillance pathway
109212694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109212694
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109212694
mRNA cycle factors
P-body specific factors
109212694
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
109212694
NCBI-ProteinID:
XP_019231908
LinkDB
All DBs
Position
Unknown
AA seq
1196 aa
AA seq
DB search
MEHPEDERRVGVEHPEKHEDEDAVARHEEYKKSVEAKMALRQINLNPDRPDTGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMEELRGVNLSKFVSEAVTAICDAKLRSTDIQAAVQIC
SLLHQRYKDFSPSLVQGLVKVFFPGKATEDVDADKNARAMKKRSTLKLLLELYFVGVVDD
TGIFVNIVKDLTNVEHLKDRDATQTNLSLLASFARQGRYLLGLPLSGQDILEEFFKALNV
TTDQKRFFRKVFQTYYDAAVELLQSEHASLRQMEHENAKTLSAKGELNEENASAYEKQRK
AYDQLYRGISGLAEALDMQPPVMPEDGHTTRVTSGDDASSPGASKDSSVLEALWDDEDTR
AFYECLPDLRAFVPAVLLGEAEPKSSEQPLKAQEHSIDSASEADEAQTAAVETAEGAVDA
GAVQEDRNDKGRDKDEKDKEKTKDKDEKDKETDKEKTKEKEAERKGEGDKEKARGVEGAN
LDGLLQRLPSCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVAT
LSTCMKDVSSMLLQLLEEEFSFLINKKDQMNIETKIRNIRFIGELCKFRMAPPGLVFSCL
KACLDEFSHHNIDVACNLLETCGRFLYRSPETAIRMANMLEILMRLKNVKNLDPRHITLV
ENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSECEAYLL
KCFMKVHRGKYGQIHLIASLTAGLSRYHDDFAVAVVDEVLEEIRVGLELNDFGMQQRRIA
HMRFLGELYNYELVDSSVIFDTLYLILVFGHETSEQDVLDPPEDCFRIRMVVTLLETCGH
YFDRGSSKRKLDRFLIHFQRYILNKGVLPLDIEFDLQDLFAELRPNMMRYASIEEVNAAL
VDLEEHERIVNVEKANNEKHSDSEKIPSRTTSGMSVNGKSLANGIEENGMHEEIMETESD
SENGTIEHVGHDDDEETDDGNRDERGDTEDESDDGDGPGSDAEDEVHVRSKVAGADPLEE
AEFERELRALMQESLDSRKLELRGRPTLNMMIPMNVFEGPSKDHRGVEGESGDETLDEGA
GGSKEVPVKVLVKRGSKQQTKKMLIPRDCSLIQSTKQKEAAELEEKQDIKRLVLEYNDRE
EEELNGLGNQPPSWTQNSGSRVAHRGNTWDAPGRGSGSRHRYLYHSGGGLYYGRRR
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atggaacatcctgaggatgaacgtcgtgttggagtggaacacccggagaaacatgaagat
gaggacgctgtggctcgtcacgaggaatacaaaaaatctgttgaggcaaagatggctctg
aggcagatcaatttgaatccagacaggccagacactggttttctcaggacgttggattct
agtattaagcgcaatactgcagttattaaaaagctaaaacagattaatgaagagcagcga
gaaggtttgatggaagagttgcgcggtgtcaacttaagcaagtttgtaagtgaagcagtg
actgctatatgtgatgcaaagcttcggtccacagacatacaagctgcagtgcagatctgt
tctctgcttcatcagcggtacaaggacttttcaccaagtcttgttcaaggccttgtgaaa
gtgttctttcctggaaaagctacagaggatgtagatgcagacaagaatgcgagggctatg
aaaaagcgtagcactttaaaacttcttttggaactttactttgttggagttgttgacgat
actggcatctttgtgaatattgttaaggacctcaccaatgttgaacatctgaaggatcgt
gatgcaactcagactaatttgtcactccttgctagctttgctcggcaaggaagatacctg
cttgggcttccattgtctggccaagatattcttgaagagtttttcaaggcccttaatgtg
acaactgatcagaaaaggttctttaggaaggtgttccaaacatattatgacgcagccgta
gaacttcttcagtcagagcatgcttcacttcggcaaatggagcatgaaaatgcaaagact
ttatctgccaaaggcgaactgaatgaggagaatgcttctgcatatgaaaagcagcggaaa
gcttatgaccagctgtatcgtggcatctcaggattggcagaagcacttgacatgcaacct
ccggtgatgcctgaggatggtcatacaaccagggtaacatcaggggacgatgcatcatcc
cctggtgccagtaaagattcttctgtccttgaagccctgtgggatgatgaagatacaagg
gctttctatgagtgtctcccagatctcagagcatttgttccagctgtattacttggagaa
gcagaaccaaagtcgagcgaacagcctctgaaggcgcaagagcattcgattgattcagca
agtgaagcagatgaagctcagactgctgcagtagagactgcagagggtgctgtagatgct
ggagctgtgcaggaggacagaaatgataaaggcagggataaagatgagaaggataaagag
aagaccaaggataaagatgaaaaggataaagagactgataaggaaaaaacaaaagaaaag
gaagctgaaagaaaaggagaaggtgacaaggagaaagcaagaggtgtcgaaggagctaat
ctagatggtctgcttcagcggctacccagttgtgttagccgtgatttgattgaccagttg
acagtggagttttgctatctgaattccaagtccaataggaaaaagcttgttagagcattg
ttcaatgtccccaggacatcactagagttgttgccatactactcacgcatggtggccact
ctgtcaacttgcatgaaggacgtgtcgtccatgcttttacagttgttggaagaggagttc
agctttctgataaataaaaaggatcaaatgaatatagaaacaaaaataaggaatattcgt
tttattggagagctctgcaaatttagaatggcaccacctggccttgtcttcagttgtcta
aaggcttgtttggatgaattcagtcatcacaatattgatgttgcttgcaatcttctcgag
acatgtgggcgttttctttaccgatctcctgaaactgcaatacgcatggcaaacatgtta
gagatattaatgcgtctgaagaatgttaaaaatttggaccctcgccacattaccttagtg
gagaatgcatattacttatgcaagccaccggaaagatctgcgcgagtgtctaaagttcgg
cctcctttgcatcagtacataagaaaattgctcttttcggatcttgacaagtcttcaata
gagcatgtgctcagacagcttcgtaagcttccttggagtgaatgcgaggcatacctcttg
aagtgtttcatgaaggttcacaggggcaagtatggtcagattcatttgattgcatcactt
actgctggtttaagtcgctatcatgatgattttgctgttgccgttgttgatgaggttctg
gaggagatcagggtgggattagagttgaatgacttcgggatgcagcaaagacgtattgct
cacatgcgtttcctaggggaattatataactatgaacttgttgattcctctgttatattt
gacacgctctatttgattctcgtttttggccatgaaacatctgagcaagatgtgctggat
cctcccgaggattgtttccgtatcaggatggttgttacactacttgaaacctgtgggcac
tactttgatcgaggttcatcgaagcgaaaacttgatcgcttcctaatacatttccagagg
tacatattgaacaaaggtgtactccccctggatatagagtttgatttgcaggacttattt
gccgaattacgtcctaacatgatgagatatgcatcaattgaagaagtcaatgctgcttta
gttgaccttgaggagcatgagcgcatagttaatgtagaaaaagccaacaatgagaagcat
tctgacagcgagaaaattcccagcaggacaacctctggaatgtctgtaaatggtaaaagc
cttgcgaatggcattgaagaaaatggaatgcatgaagagatcatggagactgaaagtgat
tccgagaatggcaccattgagcatgtgggtcacgatgatgatgaagagacagatgatggg
aatcgggatgagaggggtgacactgaggatgaatctgatgatggtgatggacctggttcg
gatgcggaggatgaagtacatgtcaggtcaaaggttgcaggggctgatcctctggaggag
gcagaatttgagagagagcttcgggctctgatgcaggaaagtttggattcaagaaaattg
gaattacggggaaggcctacactaaacatgatgataccaatgaatgtctttgaggggcca
tctaaggaccatcgcggggttgaaggagagagtggtgatgaaacgttggatgaaggagct
ggaggaagtaaggaggttccagtgaaggttcttgtgaagcgaggtagtaagcagcagaca
aagaaaatgctcattcctcgtgattgctcactcattcagagcacaaaacagaaagaagca
gctgagcttgaagaaaagcaagacatcaagaggctggttctggagtacaatgatagagag
gaagaagaacttaatgggttagggaatcagccaccaagctggacacaaaacagtgggagc
agagttgctcataggggcaacacatgggatgcacctggcaggggcagtgggtcacgtcat
cgctatctgtatcattcaggtggcgggctttattatggcagaagaagatga
DBGET
integrated database retrieval system
