Nicotiana attenuata (coyote tobacco): 109212919
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Entry
109212919 CDS
T05870
Name
(RefSeq) LOW QUALITY PROTEIN: WD repeat-containing protein 43-like
KO
K14546
U3 small nucleolar RNA-associated protein 5
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
109212919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nau03009
]
109212919
Ribosome biogenesis [BR:
nau03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
109212919
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
Utp12
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
Beta-prop_ACSF4
Beta-prop_EML
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
NBCH_WD40
WD40_Gbeta
Beta-prop_VPS8
PQQ_2
Beta-prop_HPS5
Cytochrom_D1
Beta-prop_WDR19_1st
Beta-prop_NOL10_N
Motif
Other DBs
NCBI-GeneID:
109212919
NCBI-ProteinID:
XP_019232193
LinkDB
All DBs
Position
Unknown
AA seq
604 aa
AA seq
DB search
MGTTNIRDILTCLSPSLDFFAISFGDGRIKIWDTLKGQVQTEFADIVSTETTASLFTKPG
GHLSMDYTCMKWLSCDRKKKRKLGTSLLVLGTGSGDVLALDVSAGHLKWRFTDCHPGGVN
AISFPSHGSFIYTAGADGLVCKIDSMSGNLLHKFKASTKAISSLSVSSDGKILATATSQL
KIFNCLDDKKLQKFSGHPGAVRCMIFSEDGRHVLSSAGGDRHVAVWKLDGSKKKSACCLL
PMDHPAVFLDSYCIKSGVENDASLGVLAISEIGVCYFWHGKSFEELHNLKPTKICASLDD
KILKKHKEAVHSIFSAKLQSIGTSGSGHMFVAYGLLIKPSFEKVMVQPGADIRLKSSLDG
ILLPFSQSRKSKQASNTQSQVTALDCANAEGALLPLPKILDQVGVEHGIKPTVSKDVIGK
HGEDEVTICMEDQLRSIGIISSDYDLSPSSILDPKILKGISVDASMPPKKMKSAVLSLES
PDAYNLLNALVAAWQSRSSMGRHVLPWIYCILVNHNEFVTSQEPLTPLLDSLNKLTRSKV
AALSSLLQLSGRLQLVMAQIEKADNRKSPALTLEGQMDESEDDEVDEVMYGIDEESQTSS
DGDD
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgggcacaacaaatataagggacattttgacttgtttgagtccctctttggacttcttt
gctatcagttttggtgatggccgtatcaagatatgggatacactgaagggtcaggtacaa
acggagtttgcagatattgtgtcaactgagacaacagcaagcttgtttactaagccagga
ggtcatctttctatggattatacttgcatgaagtggttatcatgtgacagaaagaaaaaa
aggaagcttggaacttcattattggttttaggtacaggcagtggtgatgttttggctcta
gatgtatctgcaggtcatctcaaatggagatttactgattgccatcctggcggtgtcaat
gccatctcattcccttcacatggttcattcatttacacggctggtgctgatggactggtt
tgcaaaattgactccatgtcggggaacttactgcataagtttaaagcttccactaaagca
atatcatctttatccgtttcgtcagatgggaaaatattagcaacagcaacttctcagttg
aaaattttcaattgcttggatgacaaaaagctccagaagttttcaggccaccctggggct
gttcggtgtatgattttctctgaagatgggagacatgtactttcttctgctggtggtgac
cgacacgtagcagtttggaagttggatggtagcaaaaagaaatcagcgtgctgcttgctt
ccaatggatcaccctgctgtctttttggatagttactgcattaaatctggagttgaaaat
gatgctagtttaggtgttttggccatttcagaaattggtgtttgctacttttggcatgga
aagagttttgaggaattgcacaatttgaagcccacaaaaatatgcgcatctttagatgat
aaaattctgaagaaacataaagaagccgtgcatagtattttttcagcaaaattgcaatct
attggcacatctggttccggtcatatgtttgttgcatatggcttgttaataaaaccatca
tttgaaaaagttatggtgcagcctggggcggatatcagattaaaaagttcacttgacggg
atccttctacccttcagtcaatctcgcaaatctaaacaagcatctaacactcagagtcag
gttactgctcttgattgtgcaaatgcagagggtgccttacttcctttgcctaagattctt
gatcaggttggtgtcgagcatggaattaagcccacagtaagcaaagatgtcattggtaaa
catggtgaagatgaggtcacaatttgcatggaggaccagttaagatccataggtataatt
agcagtgactatgatctctcgcctagctcaattcttgatcctaagattttgaaaggaata
agtgttgatgctagtatgccaccgaagaagatgaaatcagctgttttatctttggagtcg
cctgatgcttacaacttattgaatgccttggtggctgcatggcagtccagatcaagcatg
ggaagacatgttcttccatggatatactgtatattggtgaaccacaatgaatttgttaca
tcgcaggaaccactgactcctcttctggattccttgaacaagcttaccaggtcaaaggtg
gcagccctgagctctttattgcagttatctggccgtttgcagctcgtaatggcacagatt
gagaaggctgataataggaaaagccccgcactaacactcgaggggcagatggatgaaagt
gaggatgatgaggtagatgaagttatgtatggcatagatgaagaatctcaaacaagcagt
gacggagatgactag
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