Nicotiana attenuata (coyote tobacco): 109212949
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Entry
109212949 CDS
T05870
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109212949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nau03041
]
109212949
03009 Ribosome biogenesis [BR:
nau03009
]
109212949
Enzymes [BR:
nau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109212949
Spliceosome [BR:
nau03041
]
Complex A
U1 snRNP components
U1 related factors
109212949
Complex B
109212949
Ribosome biogenesis [BR:
nau03009
]
Eukaryotic type
Pre-60S particles
Helicases
109212949
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
109212949
NCBI-ProteinID:
XP_019232229
UniProt:
A0A1J6KDQ8
LinkDB
All DBs
Position
Unknown
AA seq
501 aa
AA seq
DB search
MSRYDSRPADPGSYRDRRSDSGFSGGSSYRSSSSSRKDYEGRDSPRKVDLDGLTPFEKNF
YVESPSIAAMTESEVEEYRRRREITVEGRDVPKPVKSFHDVGFPDYVIQEIEKAGFTEPT
PIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAVVHVNAQPFLAPGDGPIVLVLAPTRE
LAVQIQQEATKFGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNNTN
LRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLFNSY
KVVIGSADLKANHAICQHVEIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQVTRQ
LRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKFVINYDFPG
SLEDYVHRIGRTGRAGASGTAYTYFTAANARFAKDLINILEEAGQKVSPELAKMGRGAPP
PPGLGGFRDRGRGYGGNRQWS
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctatgatagccgtccggcggaccctggctcttaccgcgaccgtcgcagtgac
tcgggcttcagtgggggctcgagttatagatcatcgtcatcgagcaggaaagattacgag
ggtagggattcgccacggaaggttgatttggatggattgactccattcgagaagaatttc
tatgttgaatcaccgtccatcgcggcaatgactgaaagtgaggtggaagaatatagacga
cgccgggagatcactgttgagggccgtgacgtgcctaagcctgtaaagtcctttcatgac
gtaggatttccagattatgtcatccaagaaattgaaaaggctggcttcactgaacctaca
cctattcaagctcaaggctggcctatggccttgaagggccgtgatctcattggtatagca
gaaacagggtctgggaagacacttgcttatctgttgcccgcagttgtgcacgttaatgcc
cagccatttttagctcccggagatggtcctattgtcttagtattagctccaactcgtgaa
ctagctgttcagattcaacaagaagccactaaatttggtgcatcatcacggattaagaat
acctgcatttatggtggggttccaaaggggccccaagttcgtgatcttcagaaaggtgtt
gaaattgttattgccacacctggaaggttgattgatatgctagaatctaataatacaaat
ttgcgaagggtgacatatctcgtgctggacgaggctgaccgcatgctagacatgggtttt
gaacctcaaatccgcaaaattgtttctcagatacgtccagatcgtcaaacgttgtattgg
agtgccacatggcccaaggaagttgagcagcttgcaaggcagttccttttcaactcatat
aaagtggttattggttcagctgacctgaaagctaaccatgctatttgccagcatgtggaa
attgtctcggagagccagaagtataacaaattagtaaagttgctggaagatattatggat
ggtagtcggattttaattttcatggataccaaaaaggggtgtgaccaagtaactcggcag
ctccggatggatggttggcctgcactttctattcatggtgataagagtcaagcagaaaga
gattgggtcctttcagaattcaaagctggaaagtctcctataatgacagctacagatgtt
gctgctcgaggtctagatgtgaaggatgtaaaatttgtaatcaactatgattttcctgga
tcgctggaggactatgttcatcgcattggtagaacgggaagggctggtgcatcagggaca
gcatacacctactttaccgctgcgaatgctaggttcgcgaaggaccttattaacattctt
gaggaggctggacagaaggtcagtcctgaactggcaaaaatgggacgcggtgctcctccc
cctccaggtcttgggggttttcgagaccgtggaaggggttatggaggcaataggcaatgg
agctaa
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