Nicotiana attenuata (coyote tobacco): 109213263
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Entry
109213263 CDS
T05870
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nau03041
]
109213263
Enzymes [BR:
nau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109213263
Spliceosome [BR:
nau03041
]
Complex C
Other components
Complex C specific factors
109213263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RVT
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
RVT_1
Motif
Other DBs
NCBI-GeneID:
109213263
NCBI-ProteinID:
XP_019232589
LinkDB
All DBs
Position
Unknown
AA seq
956 aa
AA seq
DB search
MDLQKAFSHLRGGSGKEIPYPLPFILVMEGLNSMLKNAKSNGWVRGFRVSNNNCNMEISH
ILYADDSLILCDANIDQLRHIRLILTVFEAISGLHVNWRKTKVEKRLDEENSFGKQESGW
HGYQRFEEAEQKSTFKMALERYNYEEEALRRQVINYKYGQLSHWCTKNVKATFGVSNWRA
IRSLWPNFITHCGFNIGDGSRISFWHDNWLGHGPLKDLFPDLHNLLSSSEATIGEMWGQQ
GWNFNPRRSLNDWEIDRVAELLRHLELFQGTTNTTNSLIWKGTSKKTFTVKSAYTVLSGN
NQGDNNWPWKQIWKTKAPFKVVCFSWLVAKQACLTHENLMKRGFQLSSRCYLCSTDSESN
SHLFLHCRVTSQLWQLFLSMIGLRWTMPKTTTDLLRCWNKQEGSVRQKDWWNLIPMCIWW
IVWKERNASVIMVDEAHERSLSTDILLGLLKKIQRRRPELRIVISSATIEAKSMAAFFNT
SKRRREQKQGPTREPAILSVEGRGFNVEIFYVDDPVSDYVRAVISTVLSIHDQERTGDIL
VFLTGQDDIDAAIQLLTEEAQSSGNQGLVAVPLYSGLSRADQDLVFSPTPRGKRKVIFST
NIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKC
FRLYTEDYFASEMSVVGIPEIQRSNLVSCVIQLKALGIDNILGFDWPASPSPEAMIRALE
ILYSLGVLDDDAKLTSPTGFQVAEFPLDPLISKMILASCELGCTEEIITIAATLSIQSIW
IPVRGVQKELDEAKLRFAAAEGDHVTFLNVYKGFIQSNKSSKWCHKNFVNYHAMRKVIEV
REQLKRITQRLGIGLKSCEGDMQAVRKAVTAGFFANASRLEPFSHNGMYKTVRTSQEVYI
HPSSVLFRVNPKWIVYHSLVSTDRQYMRNVITIDPSWLTEAAPHFYQKQMHSSIPQ
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atggatctccagaaggctttttcccatctcagagggggctcaggcaaggagatcccctat
ccccttccgtttattttagtaatggagggcctcaatagcatgttaaagaatgccaagtca
aatggatgggtgaggggattcagagtttcaaataacaactgcaacatggaaatttcccac
attttatatgcagatgattctttgatattatgtgatgcaaacattgaccaactaaggcac
atcagattaattctaacagtcttcgaggcaatatcaggcttacatgtcaattggaggaag
actaaagtggaaaagagacttgacgaagaaaattcatttggcaagcaagaaagtgggtgg
catgggtatcaaagatttgaggaagcagaacaaaagtctactttcaaaatggctttggag
agatataactatgaggaagaagcattacggaggcaggtgatcaactacaagtatggccag
ttatcccattggtgcaccaaaaatgtgaaagctacttttggagttagtaattggagagct
atcagatctctttggcccaatttcatcacccactgtggcttcaatattggtgatggcagt
agaatttctttctggcatgacaattggcttgggcacggtcctctcaaagatttatttcct
gacttacacaacttactatccagttctgaagcaacaattggggagatgtggggtcagcag
gggtggaacttcaatcccagaaggtctctaaatgactgggaaattgacagagtagctgag
ctattgaggcatctggagttatttcagggcacaacaaatacaacaaactctttgatatgg
aaggggactagcaagaagacattcacagtgaaatcagcttacaccgtactatcgggaaac
aatcagggagacaacaattggccttggaaacaaatttggaaaaccaaggctcctttcaaa
gtggtatgcttttcgtggttagttgctaagcaggcctgtctaactcatgagaacctaatg
aaaagaggatttcaactgagctccagatgctatctgtgctctacagattcagaaagcaat
agccatttgtttctgcactgtagagttacttcccagttgtggcaactttttctcagcatg
attggacttaggtggactatgccaaaaaccacaacagatttactgagatgctggaataag
caggagggcagtgtaaggcaaaaagactggtggaatttgatcccaatgtgcatatggtgg
atagtttggaaggaaaggaatgccagtgtgataatggtggatgaagcccacgaaaggtcc
ctctcgacggacatcttattgggactactgaaaaagatacaaaggcgtcgtcctgagcta
cgtattgtaatatcatcggctacaattgaagcaaaatcaatggctgctttctttaatacc
agcaaaagacgacgagagcagaagcaaggaccaacaagagaacctgctattctgtcagtt
gagggtaggggatttaatgtggagatattctatgttgatgatcctgtttctgattacgtt
cgggccgttatttctacagtgttgtcgatccatgaccaggagcggacgggagatatcttg
gtgtttctcactggtcaagatgatattgatgctgcaatacagttgctcaccgaagaagcc
caaagtagtgggaaccaaggactggttgctgtgccattatactcgggactttctcgagca
gatcaggatcttgtgttttcccctactcctagaggaaaaagaaaagtgatattttcaacg
aatattgctgagacgtcattgactttagagggaattgtctatgttgttgatagtgggttc
tcaaaacaacggttctacaacccgatttcagatattgagaatttggtagtggcaccaata
tcaaaggcatctgctcgacaaagggctggtagagctggaagagttcgaccagggaagtgt
tttaggctctacacagaagattattttgccagtgagatgtctgttgtgggaatacccgag
atacagagatcaaaccttgtttcctgtgtcatccagttgaaggccttaggcatcgataat
atcttgggttttgattggccagcatctccatcacctgaagcgatgataagagcgcttgaa
atactgtactcacttggagtattagatgacgatgccaaactaacttcacctactggattt
caagttgcagagtttccactggacccattaatatctaaaatgatcttggcttcttgtgag
ttaggatgtacagaggaaataattaccattgctgctacgctctccatacagtctatttgg
attcctgttagaggagtacagaaggagttggatgaagcaaagttgagatttgcagctgcc
gagggagaccatgtcacgttcttaaatgtgtataaaggattcattcagtctaataaatct
tcgaagtggtgtcacaagaattttgtaaattatcatgccatgagaaaagtaattgaagtt
agagaacaactgaaaaggattacacaacgcttgggcataggattgaaatcttgcgaaggt
gatatgcaggcagtaaggaaggcagttacggcagggttttttgccaatgcttcccgttta
gaaccattcagtcacaatgggatgtacaagactgtcagaacgtctcaagaagtttatatt
catccttcatctgtgctgttcagggtcaacccgaagtggatcgtataccattctcttgtt
tcaacggatcgtcagtacatgcgaaatgtcattactattgatccttcttggctgacggaa
gctgcaccacatttttatcagaagcagatgcatagttctattcctcaatga
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